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The map label for this gene is csrA

Identifier: 188528212

GI number: 188528212

Start: 1434397

End: 1434627

Strand: Direct

Name: csrA

Synonym: HPSH_07380

Alternate gene names: 188528212

Gene position: 1434397-1434627 (Clockwise)

Preceding gene: 188528211

Following gene: 188528213

Centisome position: 89.17

GC content: 41.99

Gene sequence:

>231_bases
ATGCTCATACTCAGCCGCAAAGTTAATGAAGGGATTGTCATTGATGATAACATCCACATTAAAGTCATTTCCATAGATAG
AGGGAGTGTGCGTTTAGGGTTTGAAGCGCCTGAAAGCACCCTTATTTTGCGCGCTGAACTCAAAGAGGCCATTGTGAGCG
AAAACCAAAAAGCTTCTGCGTCCGTAGATGAAAGCTTGTTAGAAAACATCAAAAAGGTCATTAAGCCTTGA

Upstream 100 bases:

>100_bases
AAAACGCAGAAGGCCTTAATGTCTTGGATAAAATCAAACAAGGCGATATTATAGAGAGCGTTGTGTTTAGCTCTTCTCTA
TAAGGAACAAGAAACTAGAC

Downstream 100 bases:

>100_bases
TGCATGCCTTTGAAGTTTATCCTAAAGTCAATATTTTTTTAAAAATCCTTCACAAAGAAGGGGCTTATCATAAGCTCATT
TCTCGCATGTGTTTGGTCAA

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MLILSRKVNEGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASASVDESLLENIKKVIKP

Sequences:

>Translated_76_residues
MLILSRKVNEGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASASVDESLLENIKKVIKP
>Mature_76_residues
MLILSRKVNEGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASASVDESLLENIKKVIKP

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_HELP2 (B6JNU0)

Other databases:

- EMBL:   CP001217
- RefSeq:   YP_002302048.1
- GeneID:   7011176
- GenomeReviews:   CP001217_GR
- KEGG:   hpp:HPP12_1420
- HOGENOM:   HBG724655
- OMA:   SVCVDES
- ProtClustDB:   PRK00568
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 8396; Mature: 8396

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILSRKVNEGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASA
CEEECCCCCCCEEECCCCEEEEEEECCCCEEEECCCCCCEEEEHHHHHHHHHCCCCCCCC
SVDESLLENIKKVIKP
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLILSRKVNEGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASA
CEEECCCCCCCEEECCCCEEEEEEECCCCEEEECCCCCCEEEEHHHHHHHHHCCCCCCCC
SVDESLLENIKKVIKP
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA