| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188528207
Identifier: 188528207
GI number: 188528207
Start: 1429816
End: 1430352
Strand: Direct
Name: 188528207
Synonym: HPSH_07355
Alternate gene names: NA
Gene position: 1429816-1430352 (Clockwise)
Preceding gene: 188528206
Following gene: 188528208
Centisome position: 88.89
GC content: 34.82
Gene sequence:
>537_bases ATGATCATCTACTATCAAAACAGATATGGTGAAGGGTATGATCAAAGAGAAAAACGCCCATACTTTGTTATTTATGAAAA CAAGGACTTTTTCTTAGCATTCCCACAAACAACAAAAAAGAAACAAGGCAAAAAATACCCTTCACATAAAAACTACATTA TAAATGAAGAAAATGAGATAACGATTGATCAGTTACAAGTTGTCCCAAAAGCGCAAGTTTTAGAGAATAATATGGCAAGA AGTCTTGCATTAGCGTTACAAAAAGCGTCTATCCCTAAACCCGCATCAACGCATAGAGCCCCACTCATCAATCATTTTTT AGAACAAGTTATTTTACAAAGCCCATCTGATAAAAACAAAAATATAAAACCAATTGCTTTTGGAAGTATTATCAAACTCA ACCCACACAATAGAAATCCCTTATTAAAACCCTACAGCGCATTTATTGCGCTTTCTTGCGCTCAATTCCATTATTCAGGC ATGCGCCTAGTGGCCCCCTATGAAAACGATTCTATGATTTTTGAGTTATTGCATTGA
Upstream 100 bases:
>100_bases GGAGTGTGAGTTTAGGTATAAGGAAAACCTGTATCAAATTCTGTTAAGATTGATTAGAAAAAATTTGATTGAGTTATTTT GACCCAAAGGAGATATGAGC
Downstream 100 bases:
>100_bases TTTTCAAGCGCGCAATTTTGAACGCCAACCACTTGTTCAACTAGATCCCAAAGAAATTAAAACCCAAATCCTTGAGCATT TAAAACTCTAAAAATAAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 178; Mature: 178
Protein sequence:
>178_residues MIIYYQNRYGEGYDQREKRPYFVIYENKDFFLAFPQTTKKKQGKKYPSHKNYIINEENEITIDQLQVVPKAQVLENNMAR SLALALQKASIPKPASTHRAPLINHFLEQVILQSPSDKNKNIKPIAFGSIIKLNPHNRNPLLKPYSAFIALSCAQFHYSG MRLVAPYENDSMIFELLH
Sequences:
>Translated_178_residues MIIYYQNRYGEGYDQREKRPYFVIYENKDFFLAFPQTTKKKQGKKYPSHKNYIINEENEITIDQLQVVPKAQVLENNMAR SLALALQKASIPKPASTHRAPLINHFLEQVILQSPSDKNKNIKPIAFGSIIKLNPHNRNPLLKPYSAFIALSCAQFHYSG MRLVAPYENDSMIFELLH >Mature_178_residues MIIYYQNRYGEGYDQREKRPYFVIYENKDFFLAFPQTTKKKQGKKYPSHKNYIINEENEITIDQLQVVPKAQVLENNMAR SLALALQKASIPKPASTHRAPLINHFLEQVILQSPSDKNKNIKPIAFGSIIKLNPHNRNPLLKPYSAFIALSCAQFHYSG MRLVAPYENDSMIFELLH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20656; Mature: 20656
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIYYQNRYGEGYDQREKRPYFVIYENKDFFLAFPQTTKKKQGKKYPSHKNYIINEENEI CEEEEECCCCCCCCHHCCCCEEEEEECCCEEEECCCCCCHHCCCCCCCCCCEEECCCCCE TIDQLQVVPKAQVLENNMARSLALALQKASIPKPASTHRAPLINHFLEQVILQSPSDKNK EHHHEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC NIKPIAFGSIIKLNPHNRNPLLKPYSAFIALSCAQFHYSGMRLVAPYENDSMIFELLH CCCEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECC >Mature Secondary Structure MIIYYQNRYGEGYDQREKRPYFVIYENKDFFLAFPQTTKKKQGKKYPSHKNYIINEENEI CEEEEECCCCCCCCHHCCCCEEEEEECCCEEEECCCCCCHHCCCCCCCCCCEEECCCCCE TIDQLQVVPKAQVLENNMARSLALALQKASIPKPASTHRAPLINHFLEQVILQSPSDKNK EHHHEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC NIKPIAFGSIIKLNPHNRNPLLKPYSAFIALSCAQFHYSGMRLVAPYENDSMIFELLH CCCEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA