Click here to switch to the map view.

The map label for this gene is 188528193

Identifier: 188528193

GI number: 188528193

Start: 1419982

End: 1422075

Strand: Reverse

Name: 188528193

Synonym: HPSH_07285

Alternate gene names: NA

Gene position: 1422075-1419982 (Counterclockwise)

Preceding gene: 188528194

Following gene: 188528192

Centisome position: 88.41

GC content: 42.88

Gene sequence:

>2094_bases
ATGGCTGATAACAACCATTATGAAAACAATGAAATCAATGAAAACAATGAAAACAGCAGTGAAAATTCAAAAGCTCATCA
TGAGACGCGAGCCGGAGCGTTTGAGCGATTCACCAACCGCAAAAAGCGTTTTAGAGAAAACGCGCAAAAAAACGCAGAGT
ATTCAAACCATGAAGCGCCTTCACACCATAAAAAAGAGCGCCACCCCAACAAAAAACCAAACCACCACCACAAAGCTAAA
CACACCCCCCAAAAGACCAGAAATTACGCCCAAGAAGAATTGGATAGCAACAAAGTAGAGGGCGTTACGGAAATTTTGCA
TGTGAATGAGAGAGGGACTTTAGGCTTTCATAAGGAGCTAAAAAAGGGCGTTGAAGCTAATAACAAGATCCAGGTGGAGC
ATTTAAACCCGCATTATAAGATGAATTTAAACTCTAAAGCGAGCGTTAAAATCACGCCTTTAGGGGGCTTGGGCGAGATT
GGGGGGAACATGATGGTCATTGAAACCCCAAAAAGTGCGATCGTGATTGATGCGGGCATGAGCTTCCCTAAAGAGGGGCT
CTTTGGCGTGGATATTTTAATCCCGGATTTTTCCTACTTGCACCAAATCAAGGACAAAATCGCTGGCATTATCATCACCC
ATGCCCATGAAGATCACATAGGAGCCACGCCTTATTTGTTTAAAGAGTTGCAATTCCCCCTTTATGGCACGCCCTTGAGT
TTGGGGCTGATTGGGAGCAAGTTTGATGAACATGGTTTGAAAAAATACCGCTCGTATTTTAAAATCGTAGAAAAGCGCTG
CCCCATTAGCGTGGGCGAATTTATCATTGAATGGATCCATATCACGCATTCCATTATTGACAGCAGCGCTTTAGCGATCC
AAACTAAAGCCGGAACCATCATCCACACCGGCGATTTTAAAATCGATCACACTCCGGTGGATAATCTGCCCACTGATTTG
TATCGTTTAGCGCACTATGGCGAAAAGGGGGTGATGCTTCTTTTAAGCGATTCCACTAACTCCCATAAATCTGGGACCAC
ACCGAGTGAAAGCACCATAGCACCGGCTTTTGATACGCTTTTTAAAGAAGCGCAAGGGAGGGTGATTATGAGCACATTCT
CTAGCAATATCCACCGGGTGTATCAAGCCATACAATACGGCATTAAATACAACCGCAAGATCGCTGTGATCGGGCGCTCT
ATGGAAAAAAACCTAGACATCGCCAGAGAATTAGGCTATATCCATTTGCCTTATCAATCTTTTATTGAAGCCAATGAAGT
CGCTAAATACCCGGATAATGAAGTTTTAATCGTAACGACCGGCTCACAAGGTGAAACCATGAGCGCGCTTTATCGCATGG
CGACTGATGAACACCGCCACATTTCTATCAAACCCAACGATTTAGTCATTATCTCCGCTAAAGCCATTCCTGGCAATGAA
GCGAGCGTTTCAGCGGTATTGAATTTTTTAATCAAAAAAGAAGCTAAAGTGGCTTATCAAGAATTTGACAATATCCATGT
GAGCGGGCATGCCGCCCAAGAAGAGCAAAAGCTCATGTTAAGACTTATTAAGCCTAAGTTTTTCTTACCCGTGCATGGGG
AATATAACCATGTCGCGCGCCACAAGCAAACCGCTATTTCTTGCGGGGTGCCTGAAAAAAATATCTATTTAATGGAAGAT
GGCGATCAAGTGGAGGTTGGCCCTGCATTCATTAAAAAAGTGGGCACGATTAAAAGCGGTAAAAGCTATGTGGATAACCA
AAGCAATTTGAGTATTGACACAAGCATTGTGCAACAAAGAGAAGAAGTCGCTAGCGCTGGGGTGTTTGCCGCTACGATTT
TTGTGAGTAAAAACAAACAAGCGCTTTTAGAAAGCTCTCAATTTTCTAGTTTAGGGCTTGTGGGCTTTAAAGATGAAAAG
CCTTTGATGAAAGAAATTCAAGGGGGATTAGAGTTGTTATTGAAATCCAGCAACGCCGAAATTTTGAATAGCCCTAAAAA
ATTAGAAGATCACACTCGTAATTTCATCAGAAAAGCGCTCTTTAAAAAGTTTAGAAAATACCCGGCTATCATTTGCCATG
TCCATGCCACTTGA

Upstream 100 bases:

>100_bases
AACAAGCGTGAGGGCGTCTGAGATAAAAGATTATCTCAAGCTCTTAGAATACCTTTTAAAAGGCTAATGCCTTTTTAAAA
AATTGAAAGGAATAATCGTT

Downstream 100 bases:

>100_bases
TTACAACGCTATCGCCGCGCAAGTCTTAAGAGATGAAGCGAGCGCGCTTTTAGAAAGCGTTAAGCAATTCCAAAAACCTA
ACGATTTAGAAGCGATTGTC

Product: conserved hypothetical ATP-binding protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 697; Mature: 696

Protein sequence:

>697_residues
MADNNHYENNEINENNENSSENSKAHHETRAGAFERFTNRKKRFRENAQKNAEYSNHEAPSHHKKERHPNKKPNHHHKAK
HTPQKTRNYAQEELDSNKVEGVTEILHVNERGTLGFHKELKKGVEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEI
GGNMMVIETPKSAIVIDAGMSFPKEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLS
LGLIGSKFDEHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDFKIDHTPVDNLPTDL
YRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRS
MEKNLDIARELGYIHLPYQSFIEANEVAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNE
ASVSAVLNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISCGVPEKNIYLMED
GDQVEVGPAFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASAGVFAATIFVSKNKQALLESSQFSSLGLVGFKDEK
PLMKEIQGGLELLLKSSNAEILNSPKKLEDHTRNFIRKALFKKFRKYPAIICHVHAT

Sequences:

>Translated_697_residues
MADNNHYENNEINENNENSSENSKAHHETRAGAFERFTNRKKRFRENAQKNAEYSNHEAPSHHKKERHPNKKPNHHHKAK
HTPQKTRNYAQEELDSNKVEGVTEILHVNERGTLGFHKELKKGVEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEI
GGNMMVIETPKSAIVIDAGMSFPKEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLS
LGLIGSKFDEHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDFKIDHTPVDNLPTDL
YRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRS
MEKNLDIARELGYIHLPYQSFIEANEVAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNE
ASVSAVLNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISCGVPEKNIYLMED
GDQVEVGPAFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASAGVFAATIFVSKNKQALLESSQFSSLGLVGFKDEK
PLMKEIQGGLELLLKSSNAEILNSPKKLEDHTRNFIRKALFKKFRKYPAIICHVHAT
>Mature_696_residues
ADNNHYENNEINENNENSSENSKAHHETRAGAFERFTNRKKRFRENAQKNAEYSNHEAPSHHKKERHPNKKPNHHHKAKH
TPQKTRNYAQEELDSNKVEGVTEILHVNERGTLGFHKELKKGVEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIG
GNMMVIETPKSAIVIDAGMSFPKEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSL
GLIGSKFDEHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDFKIDHTPVDNLPTDLY
RLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSM
EKNLDIARELGYIHLPYQSFIEANEVAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNEA
SVSAVLNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISCGVPEKNIYLMEDG
DQVEVGPAFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASAGVFAATIFVSKNKQALLESSQFSSLGLVGFKDEKP
LMKEIQGGLELLLKSSNAEILNSPKKLEDHTRNFIRKALFKKFRKYPAIICHVHAT

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 78254; Mature: 78123

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADNNHYENNEINENNENSSENSKAHHETRAGAFERFTNRKKRFRENAQKNAEYSNHEAP
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SHHKKERHPNKKPNHHHKAKHTPQKTRNYAQEELDSNKVEGVTEILHVNERGTLGFHKEL
CHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHEECCCCCCCHHHHH
KKGVEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIETPKSAIVIDAGM
HHCCCCCCEEEEEECCCCEEECCCCCCEEEEEECCCHHHCCCCEEEEECCCCEEEEECCC
SFPKEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLS
CCCCCCCCEEEEECCCHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCE
LGLIGSKFDEHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTI
ECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEE
IHTGDFKIDHTPVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTL
EECCCEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
FKEAQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQS
HHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHCCEEECCHHH
FIEANEVAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNE
HHCHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCC
ASVSAVLNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVAR
HHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHH
HKQTAISCGVPEKNIYLMEDGDQVEVGPAFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQR
HHHHEEECCCCCCCEEEEECCCEEEECHHHHHHHCCCCCCCHHCCCCCCCEEHHHHHHHH
EEVASAGVFAATIFVSKNKQALLESSQFSSLGLVGFKDEKPLMKEIQGGLELLLKSSNAE
HHHHHCCEEEEEEEEECCHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHEEHCCCCCH
ILNSPKKLEDHTRNFIRKALFKKFRKYPAIICHVHAT
HHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECC
>Mature Secondary Structure 
ADNNHYENNEINENNENSSENSKAHHETRAGAFERFTNRKKRFRENAQKNAEYSNHEAP
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SHHKKERHPNKKPNHHHKAKHTPQKTRNYAQEELDSNKVEGVTEILHVNERGTLGFHKEL
CHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHEECCCCCCCHHHHH
KKGVEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIETPKSAIVIDAGM
HHCCCCCCEEEEEECCCCEEECCCCCCEEEEEECCCHHHCCCCEEEEECCCCEEEEECCC
SFPKEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLS
CCCCCCCCEEEEECCCHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCE
LGLIGSKFDEHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTI
ECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEE
IHTGDFKIDHTPVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTL
EECCCEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
FKEAQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQS
HHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHCCEEECCHHH
FIEANEVAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNE
HHCHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCC
ASVSAVLNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVAR
HHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHH
HKQTAISCGVPEKNIYLMEDGDQVEVGPAFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQR
HHHHEEECCCCCCCEEEEECCCEEEECHHHHHHHCCCCCCCHHCCCCCCCEEHHHHHHHH
EEVASAGVFAATIFVSKNKQALLESSQFSSLGLVGFKDEKPLMKEIQGGLELLLKSSNAE
HHHHHCCEEEEEEEEECCHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHEEHCCCCCH
ILNSPKKLEDHTRNFIRKALFKKFRKYPAIICHVHAT
HHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]