Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188528176

Identifier: 188528176

GI number: 188528176

Start: 1403060

End: 1404400

Strand: Reverse

Name: 188528176

Synonym: HPSH_07185

Alternate gene names: NA

Gene position: 1404400-1403060 (Counterclockwise)

Preceding gene: 188528177

Following gene: 188528175

Centisome position: 87.31

GC content: 31.47

Gene sequence:

>1341_bases
ATGAGTGATTATAGAACTTTTTTTAATGAAATAAAACTCGCTTTAAAAGAGCTTGAAATGAAAAGAGCTAGGGGTTTGCA
TGATTACAATGTGTTTAGCGTGCTGATGCGTGAGAGCGATGAAGTAAGGCATTCTAAAATCTTATGTTCATTCTTAGACC
CTATGGGGGAACACTATCAAAAAGGCTTGTTTTTAAAGGCGTTTTTAAAGGTGTGTCATTTAGAAAGTTTTGGTTTTAAT
AGTGCGGATACTAAAATTGTTGAAAACGAAGTTACTACAAATGGCAGTAAGCGAATGGATTTGTTTTTGAGCGATCGGTT
TAAGCATATTATTTTAGAAAATAAGATATACGCACGCGATAATAAAAATCAAATTTCTGATTATATTCTAGGCGTAGTTG
AGGCCTATAAAGTTAAGGATGCACAAGATATTTGTGTTTTGTATTTAACAAAAGAAGGACGCTCGCCTGATCCAAACAGC
TTAGGCGATTTTGAATTAGATGAGAGTAAGGCAAAGCTATTTTATAAGGGCAATGATGAAAAAATTCTTAAACTAGAAAA
TTTAGAGCAAGGCATACTTTTTAAAAACCTTTGCTATAAAAAAGAGATAAAAGAATGGATTAACAAGTGTTCAGAAGAAG
TGGCGAATTTGCATGATTTAAGCGTGTTTTTCAAGCAATACGACAAATTATTAGACAAACTTTATCATAAGGAGCAAAAC
ATGAATAGCGAATTACACAAAATAATGGAAGTCAATTATGAAATAGCCAAGGAAGTAGCTGAAAATTTTAATCCATTTAA
GGCGGAAAAAGTAGTGGAGTTTCTAACACAAGCTAAAGAACAAATAGAGGAAAAAATGAGTGCCGATGATAGAGTGAAGT
GGGAAGTATCTTGCGAAACTGATACTAATAAGCTTGGCAAGAACGTGGCGAGAGGCTTAAAATTTATTTTCAAAGAGTAT
GATTTTTTTAGAGTTGAATTGCTTATGACACATGAAGGAGATTTTAAGTTTAAAAAACCTAATCTTGAAATCGATGCGGC
AGGTAAAAAATTTGAGCAGTCTATATTCAATAAATTTCTTGAGACAGACTATCAAGAAATTGCACAGCAATTTAATATCA
ATGAAAAAGATGGGCTAACAAAAAATAGGGAATGGTTTAAAGGAAAATATTATAAATATATTAATGAATCATTGAATATC
AATGAATATTTTGTGGATTGTATTATTGATAAAACCCTAAGTGCAGAAAAATTGGGCGAGTTTATTTTTGACTACTTCAA
CGAGAATAAAGCATTAGTAGAGACACTAAATGCTAACATTAAAGAATATGCAAAAAAATAA

Upstream 100 bases:

>100_bases
AAAGGAGTTGTGCAACACTTTGTATGAGATTAAAAACTTTACATGGTATTGTGGGGGGAGTTATGATAAAAGCCATAAGG
AATAATTTAAGGAGTAGAAA

Downstream 100 bases:

>100_bases
AAGCATGGGCTTTAAGCAAGAATTGTTAGCATTACTATAAATAGGAGTGTTGGCTATCATAAGGGTAGATTTAAAATCTA
TCCTACTTTACTTCTTGCTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MSDYRTFFNEIKLALKELEMKRARGLHDYNVFSVLMRESDEVRHSKILCSFLDPMGEHYQKGLFLKAFLKVCHLESFGFN
SADTKIVENEVTTNGSKRMDLFLSDRFKHIILENKIYARDNKNQISDYILGVVEAYKVKDAQDICVLYLTKEGRSPDPNS
LGDFELDESKAKLFYKGNDEKILKLENLEQGILFKNLCYKKEIKEWINKCSEEVANLHDLSVFFKQYDKLLDKLYHKEQN
MNSELHKIMEVNYEIAKEVAENFNPFKAEKVVEFLTQAKEQIEEKMSADDRVKWEVSCETDTNKLGKNVARGLKFIFKEY
DFFRVELLMTHEGDFKFKKPNLEIDAAGKKFEQSIFNKFLETDYQEIAQQFNINEKDGLTKNREWFKGKYYKYINESLNI
NEYFVDCIIDKTLSAEKLGEFIFDYFNENKALVETLNANIKEYAKK

Sequences:

>Translated_446_residues
MSDYRTFFNEIKLALKELEMKRARGLHDYNVFSVLMRESDEVRHSKILCSFLDPMGEHYQKGLFLKAFLKVCHLESFGFN
SADTKIVENEVTTNGSKRMDLFLSDRFKHIILENKIYARDNKNQISDYILGVVEAYKVKDAQDICVLYLTKEGRSPDPNS
LGDFELDESKAKLFYKGNDEKILKLENLEQGILFKNLCYKKEIKEWINKCSEEVANLHDLSVFFKQYDKLLDKLYHKEQN
MNSELHKIMEVNYEIAKEVAENFNPFKAEKVVEFLTQAKEQIEEKMSADDRVKWEVSCETDTNKLGKNVARGLKFIFKEY
DFFRVELLMTHEGDFKFKKPNLEIDAAGKKFEQSIFNKFLETDYQEIAQQFNINEKDGLTKNREWFKGKYYKYINESLNI
NEYFVDCIIDKTLSAEKLGEFIFDYFNENKALVETLNANIKEYAKK
>Mature_445_residues
SDYRTFFNEIKLALKELEMKRARGLHDYNVFSVLMRESDEVRHSKILCSFLDPMGEHYQKGLFLKAFLKVCHLESFGFNS
ADTKIVENEVTTNGSKRMDLFLSDRFKHIILENKIYARDNKNQISDYILGVVEAYKVKDAQDICVLYLTKEGRSPDPNSL
GDFELDESKAKLFYKGNDEKILKLENLEQGILFKNLCYKKEIKEWINKCSEEVANLHDLSVFFKQYDKLLDKLYHKEQNM
NSELHKIMEVNYEIAKEVAENFNPFKAEKVVEFLTQAKEQIEEKMSADDRVKWEVSCETDTNKLGKNVARGLKFIFKEYD
FFRVELLMTHEGDFKFKKPNLEIDAAGKKFEQSIFNKFLETDYQEIAQQFNINEKDGLTKNREWFKGKYYKYINESLNIN
EYFVDCIIDKTLSAEKLGEFIFDYFNENKALVETLNANIKEYAKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52645; Mature: 52513

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDYRTFFNEIKLALKELEMKRARGLHDYNVFSVLMRESDEVRHSKILCSFLDPMGEHYQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
KGLFLKAFLKVCHLESFGFNSADTKIVENEVTTNGSKRMDLFLSDRFKHIILENKIYARD
CCHHHHHHHHHHHHHHCCCCCCCCEEECCHHCCCCCCCEEHHHHHHHHHHHHCCCEEECC
NKNQISDYILGVVEAYKVKDAQDICVLYLTKEGRSPDPNSLGDFELDESKAKLFYKGNDE
CHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCC
KILKLENLEQGILFKNLCYKKEIKEWINKCSEEVANLHDLSVFFKQYDKLLDKLYHKEQN
CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MNSELHKIMEVNYEIAKEVAENFNPFKAEKVVEFLTQAKEQIEEKMSADDRVKWEVSCET
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
DTNKLGKNVARGLKFIFKEYDFFRVELLMTHEGDFKFKKPNLEIDAAGKKFEQSIFNKFL
CHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEECCCEEEECCCHHHHHHHHHHHH
ETDYQEIAQQFNINEKDGLTKNREWFKGKYYKYINESLNINEYFVDCIIDKTLSAEKLGE
HCHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHH
FIFDYFNENKALVETLNANIKEYAKK
HHHHHHCCCHHHHHHHHCCHHHHHCC
>Mature Secondary Structure 
SDYRTFFNEIKLALKELEMKRARGLHDYNVFSVLMRESDEVRHSKILCSFLDPMGEHYQ
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
KGLFLKAFLKVCHLESFGFNSADTKIVENEVTTNGSKRMDLFLSDRFKHIILENKIYARD
CCHHHHHHHHHHHHHHCCCCCCCCEEECCHHCCCCCCCEEHHHHHHHHHHHHCCCEEECC
NKNQISDYILGVVEAYKVKDAQDICVLYLTKEGRSPDPNSLGDFELDESKAKLFYKGNDE
CHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCC
KILKLENLEQGILFKNLCYKKEIKEWINKCSEEVANLHDLSVFFKQYDKLLDKLYHKEQN
CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MNSELHKIMEVNYEIAKEVAENFNPFKAEKVVEFLTQAKEQIEEKMSADDRVKWEVSCET
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
DTNKLGKNVARGLKFIFKEYDFFRVELLMTHEGDFKFKKPNLEIDAAGKKFEQSIFNKFL
CHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEECCCEEEECCCHHHHHHHHHHHH
ETDYQEIAQQFNINEKDGLTKNREWFKGKYYKYINESLNINEYFVDCIIDKTLSAEKLGE
HCHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHH
FIFDYFNENKALVETLNANIKEYAKK
HHHHHHCCCHHHHHHHHCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA