| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188528110
Identifier: 188528110
GI number: 188528110
Start: 1329340
End: 1329921
Strand: Direct
Name: 188528110
Synonym: HPSH_06835
Alternate gene names: NA
Gene position: 1329340-1329921 (Clockwise)
Preceding gene: 188528109
Following gene: 188528114
Centisome position: 82.64
GC content: 38.83
Gene sequence:
>582_bases ATGAACGCATTGAAAAAATTAAGTTTCTGCGCCTTGCTATCCCTAGGCCTCTTCGCTCAAACAGCGCATGCTAAGAGTTT GAAAGACACGATTAACTACCCTGATTGGCTTAAAATCAATCTTTTTGACAACAAGAACCCGCTCAATCAATATGTCGGAT CGGCTTCAATTTTTGGTAAAAGGAACGATTTTTATTCCAACTACATCCCCTATGATGACAAATTGCCCCCTGAAAAGAAC GCTGAAAAAGTGGCTTTTTTAAGGGCTAGAATGAACGCCTATAGCATTTTAGAGATTCTCTTAATAACCAAGAAAGTGCG AGAACGCATTTATAAGGAGTTTCAAGATAAAGACCAATCCATCAACAATCTGTTTGGAGTGGTTGATTTGTTAGTCTCTA AATCCATTTTAGCTAAAAGGTTCGTGGATACCATCAACCATCGTGTGTATGTTATGGTGCAATTCCCTTTCATTCAGCCT GAAGATCTTATCGCTTACTTTAAAGCAAAGCATATCAACCTTTCTCCAACGAGCGCTACCAATCTCAGTGCCATTTTAAA TAAGGCGTTGTTCCACATCTAA
Upstream 100 bases:
>100_bases TAAGCTATCCCAGTATTTCTCTTTTTTGAGAAATACCACCTATCCTAAAAGCGTAGGGCGTTTTTAATATTCTTTATTCT TTTATAGAAAGGAAGCTACA
Downstream 100 bases:
>100_bases GAGTTTGGGATTTAAGATGCGGTTTTTAAGCGTGAAGCTATGCCGATGAAAAGGCGTAGCCCCTAGCTTAATCATCGCTT CTATATGCTGTTTAGTCCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 193; Mature: 193
Protein sequence:
>193_residues MNALKKLSFCALLSLGLFAQTAHAKSLKDTINYPDWLKINLFDNKNPLNQYVGSASIFGKRNDFYSNYIPYDDKLPPEKN AEKVAFLRARMNAYSILEILLITKKVRERIYKEFQDKDQSINNLFGVVDLLVSKSILAKRFVDTINHRVYVMVQFPFIQP EDLIAYFKAKHINLSPTSATNLSAILNKALFHI
Sequences:
>Translated_193_residues MNALKKLSFCALLSLGLFAQTAHAKSLKDTINYPDWLKINLFDNKNPLNQYVGSASIFGKRNDFYSNYIPYDDKLPPEKN AEKVAFLRARMNAYSILEILLITKKVRERIYKEFQDKDQSINNLFGVVDLLVSKSILAKRFVDTINHRVYVMVQFPFIQP EDLIAYFKAKHINLSPTSATNLSAILNKALFHI >Mature_193_residues MNALKKLSFCALLSLGLFAQTAHAKSLKDTINYPDWLKINLFDNKNPLNQYVGSASIFGKRNDFYSNYIPYDDKLPPEKN AEKVAFLRARMNAYSILEILLITKKVRERIYKEFQDKDQSINNLFGVVDLLVSKSILAKRFVDTINHRVYVMVQFPFIQP EDLIAYFKAKHINLSPTSATNLSAILNKALFHI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22194; Mature: 22194
Theoretical pI: Translated: 10.04; Mature: 10.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNALKKLSFCALLSLGLFAQTAHAKSLKDTINYPDWLKINLFDNKNPLNQYVGSASIFGK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHCCCHHHCCC RNDFYSNYIPYDDKLPPEKNAEKVAFLRARMNAYSILEILLITKKVRERIYKEFQDKDQS CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH INNLFGVVDLLVSKSILAKRFVDTINHRVYVMVQFPFIQPEDLIAYFKAKHINLSPTSAT HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCH NLSAILNKALFHI HHHHHHHHHHHCC >Mature Secondary Structure MNALKKLSFCALLSLGLFAQTAHAKSLKDTINYPDWLKINLFDNKNPLNQYVGSASIFGK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHCCCHHHCCC RNDFYSNYIPYDDKLPPEKNAEKVAFLRARMNAYSILEILLITKKVRERIYKEFQDKDQS CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH INNLFGVVDLLVSKSILAKRFVDTINHRVYVMVQFPFIQPEDLIAYFKAKHINLSPTSAT HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCH NLSAILNKALFHI HHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA