BacMap

Definition	Helicobacter pylori Shi470, complete genome.
Accession	NC_010698
Length	1,608,548

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The map label for this gene is yhcG [H]

Identifier: 188528007

GI number: 188528007

Start: 1245528

End: 1246214

Strand: Reverse

Name: yhcG [H]

Synonym: HPSH_06310

Alternate gene names: 188528007

Gene position: 1246214-1245528 (Counterclockwise)

Preceding gene: 188528008

Following gene: 188528005

Centisome position: 77.47

GC content: 37.7

Gene sequence:

>687_bases
ATGCTAGTAGAAATAGAGAATTTGACTAAAACCTATGGGAGTTTAAAAGCGTTAGACAATATCAATTTGAAACTACCCAA
ACAGCAATTTATAGGGCTTTTAGGCCCTAATGGAGCGGGTAAAACCACTCTGTTAAAAATTTTAGCCGGATTGAATTTGA
ACTATCAAGGGGAAGTGAAAATTTTAAATCAAAAGATCGGCATAGAGACTAAAAAAAGCGTGGCGTTTTTAAGCGATGGC
GATTTTTTAGACCCTAAATTAACGCCTTTAAAAGCGATCGCTTTTTACAAGGATTTTTTCAGCGATTTTGATCCATCAAA
AGCCCTAGATTTGCTCAAACGCTTCAGCGTGCCTTTAAAAAGAGAGTTCAAAGCCCTTTCAAAAGGCATGAGGGAAAAAT
TACAGCTGATTTTAACCCTATCACGAAACGCTTCTTTGTATCTTTTTGATGAGCCGGTGGCTGGGATTGACCCTATTGCA
AGAGAAGAGATTTTTGAACTCATCGCTAAGGAATTTAGCCAAAACGCAAGCTTGTTAGTCTCTACGCATTTGGTGGTGGA
TGTGGAAAAGTATTTAGATAGCGCGATTTTTTTAAAAGAAGCTAAAGTGGTGGCTTTTGGCGATGTGGGAGAATTGAAAA
AAGGGTATAGCAGTTTGGAAATGGCGTATAAAGAAAGGTTGAAATAA

Upstream 100 bases:

>100_bases
TGTTTTTCACGCCGATTTTATGGCCTGATTTCACCCCTAAAGATTTAGAAAATATCATTAGCGATTTTTACAAAAGAGTG
CGCAAATTCGGGGAATTAAA

Downstream 100 bases:

>100_bases
ATCAGTCAATTTGTCTTAAAACGCCTAAACGCCAATTAAAACTATCACAGATCGCTTGAATATTTTTGCATGGAATTTCT
TTAAAATTTAAGTATAATTG

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MLVEIENLTKTYGSLKALDNINLKLPKQQFIGLLGPNGAGKTTLLKILAGLNLNYQGEVKILNQKIGIETKKSVAFLSDG
DFLDPKLTPLKAIAFYKDFFSDFDPSKALDLLKRFSVPLKREFKALSKGMREKLQLILTLSRNASLYLFDEPVAGIDPIA
REEIFELIAKEFSQNASLLVSTHLVVDVEKYLDSAIFLKEAKVVAFGDVGELKKGYSSLEMAYKERLK

Sequences:

>Translated_228_residues
MLVEIENLTKTYGSLKALDNINLKLPKQQFIGLLGPNGAGKTTLLKILAGLNLNYQGEVKILNQKIGIETKKSVAFLSDG
DFLDPKLTPLKAIAFYKDFFSDFDPSKALDLLKRFSVPLKREFKALSKGMREKLQLILTLSRNASLYLFDEPVAGIDPIA
REEIFELIAKEFSQNASLLVSTHLVVDVEKYLDSAIFLKEAKVVAFGDVGELKKGYSSLEMAYKERLK
>Mature_228_residues
MLVEIENLTKTYGSLKALDNINLKLPKQQFIGLLGPNGAGKTTLLKILAGLNLNYQGEVKILNQKIGIETKKSVAFLSDG
DFLDPKLTPLKAIAFYKDFFSDFDPSKALDLLKRFSVPLKREFKALSKGMREKLQLILTLSRNASLYLFDEPVAGIDPIA
REEIFELIAKEFSQNASLLVSTHLVVDVEKYLDSAIFLKEAKVVAFGDVGELKKGYSSLEMAYKERLK

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27881501, Length=225, Percent_Identity=29.7777777777778, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI30795238, Length=225, Percent_Identity=29.7777777777778, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI47078218, Length=226, Percent_Identity=29.2035398230088, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI153792144, Length=229, Percent_Identity=28.3842794759825, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI45446740, Length=226, Percent_Identity=29.2035398230088, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI27477115, Length=218, Percent_Identity=28.4403669724771, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI21536376, Length=218, Percent_Identity=31.1926605504587, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI6005701, Length=218, Percent_Identity=27.0642201834862, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI116734710, Length=228, Percent_Identity=27.1929824561404, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI105990541, Length=191, Percent_Identity=29.3193717277487, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI27436953, Length=207, Percent_Identity=25.6038647342995, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI31657092, Length=200, Percent_Identity=27, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI27262624, Length=217, Percent_Identity=26.2672811059908, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI27262626, Length=217, Percent_Identity=26.2672811059908, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI48994943, Length=232, Percent_Identity=28.8793103448276, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87081782, Length=221, Percent_Identity=24.8868778280543, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1790739, Length=226, Percent_Identity=25.6637168141593, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789991, Length=222, Percent_Identity=24.7747747747748, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789593, Length=217, Percent_Identity=23.963133640553, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789672, Length=215, Percent_Identity=26.046511627907, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI48995001, Length=229, Percent_Identity=25.764192139738, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786563, Length=204, Percent_Identity=28.921568627451, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787089, Length=228, Percent_Identity=25, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1790467, Length=219, Percent_Identity=25.5707762557078, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI87081709, Length=235, Percent_Identity=25.531914893617, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786872, Length=217, Percent_Identity=27.1889400921659, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=22.3744292237443, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788761, Length=175, Percent_Identity=28, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790544, Length=229, Percent_Identity=23.1441048034935, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1786319, Length=212, Percent_Identity=25, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789586, Length=229, Percent_Identity=27.5109170305677, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081791, Length=177, Percent_Identity=28.8135593220339, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788225, Length=226, Percent_Identity=25.2212389380531, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1786698, Length=193, Percent_Identity=29.5336787564767, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI87082268, Length=233, Percent_Identity=24.0343347639485, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788472, Length=231, Percent_Identity=22.0779220779221, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787164, Length=203, Percent_Identity=25.1231527093596, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1787712, Length=189, Percent_Identity=24.8677248677249, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI2367384, Length=162, Percent_Identity=28.3950617283951, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788165, Length=169, Percent_Identity=27.810650887574, Blast_Score=61, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=236, Percent_Identity=27.1186440677966, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71983516, Length=233, Percent_Identity=29.6137339055794, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI71983510, Length=233, Percent_Identity=29.6137339055794, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI71983523, Length=233, Percent_Identity=29.6137339055794, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI115533608, Length=192, Percent_Identity=31.25, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17510237, Length=228, Percent_Identity=27.6315789473684, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221512771, Length=225, Percent_Identity=27.5555555555556, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24666092, Length=220, Percent_Identity=27.2727272727273, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007184, Length=214, Percent_Identity=28.0373831775701, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI221500365, Length=214, Percent_Identity=28.0373831775701, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI116007328, Length=201, Percent_Identity=26.3681592039801, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28574150, Length=201, Percent_Identity=26.3681592039801, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24650853, Length=202, Percent_Identity=27.2277227722772, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24650855, Length=202, Percent_Identity=27.2277227722772, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI281362751, Length=207, Percent_Identity=27.0531400966184, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI28573571, Length=225, Percent_Identity=24, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24582014, Length=202, Percent_Identity=27.7227722772277, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24582012, Length=202, Percent_Identity=27.7227722772277, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI28573573, Length=219, Percent_Identity=24.2009132420091, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI85725262, Length=198, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648314, Length=228, Percent_Identity=23.6842105263158, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24643674, Length=223, Percent_Identity=23.7668161434978, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 25480; Mature: 25480

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVEIENLTKTYGSLKALDNINLKLPKQQFIGLLGPNGAGKTTLLKILAGLNLNYQGEVK
CEEEEHHHHHHHHHHHHHCCCCEEECHHHHCEEECCCCCCHHHHHHHHHCCCCCCCCCEE
ILNQKIGIETKKSVAFLSDGDFLDPKLTPLKAIAFYKDFFSDFDPSKALDLLKRFSVPLK
EEEHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH
REFKALSKGMREKLQLILTLSRNASLYLFDEPVAGIDPIAREEIFELIAKEFSQNASLLV
HHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
STHLVVDVEKYLDSAIFLKEAKVVAFGDVGELKKGYSSLEMAYKERLK
HHHHHEEHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLVEIENLTKTYGSLKALDNINLKLPKQQFIGLLGPNGAGKTTLLKILAGLNLNYQGEVK
CEEEEHHHHHHHHHHHHHCCCCEEECHHHHCEEECCCCCCHHHHHHHHHCCCCCCCCCEE
ILNQKIGIETKKSVAFLSDGDFLDPKLTPLKAIAFYKDFFSDFDPSKALDLLKRFSVPLK
EEEHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH
REFKALSKGMREKLQLILTLSRNASLYLFDEPVAGIDPIAREEIFELIAKEFSQNASLLV
HHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
STHLVVDVEKYLDSAIFLKEAKVVAFGDVGELKKGYSSLEMAYKERLK
HHHHHEEHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]