| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527995
Identifier: 188527995
GI number: 188527995
Start: 1234264
End: 1234932
Strand: Reverse
Name: 188527995
Synonym: HPSH_06250
Alternate gene names: NA
Gene position: 1234932-1234264 (Counterclockwise)
Preceding gene: 188527996
Following gene: 188527993
Centisome position: 76.77
GC content: 37.52
Gene sequence:
>669_bases ATGGCGCTTGAAGTGGTTTTATGGGATTTTGATGGCGTGATTTTTGACAGCATGCATTTAAAATATGAAGGGTTTAAGGC GTTGTTTCAAAAGCATGGCAACAAGAATCAAGAGAATTTGAAACAATTTGAAGTTTATCATTACCAAAGCGGGGGGATTT CAAGGAATGAAAAAATCCAATATTTTTATAACGAGATTTTAAAAACCCCTATCGCTCAAGAAGAAGTGGGTGCATTAGCC CTAGAGTTTGGCGCTATTATAGAACAAAAGCTTTTTGATAGGGGGCATTTGAATAGCGAAGTGATGGCGTTTATTGATAA GCATTATAAAAATCATGTTTTCCATATCGCTTCAGCGGCCTTGCATAGCGAATTGCAAGTGTTGTGCGAGTTTTTAGGGA TCATTAAATATTTTAAGAGCGTTGAAGGGAGTCCGCCTAATAAACCTAAAATCATCGCCAATATCATTCAAAAATATGCC TATAACCCAAGCCGCATGCTAATGATAGGCGATAGCGTCAATGACTATGAAAGCGCTAAGGCTAATAAAGTGGCGTTTTT GGGTTACAACAGCAAGGTTTTGAAAAATTTGGTGGGTCAAAACGGCTATCAAGGGAAGTATTTGGAGAGCTTTAAAGGGT TTGATTTGCAAAACTTTATAAAAGAGTGA
Upstream 100 bases:
>100_bases TCAAGATAGTTCCAACCTTTAAACGGCAAAAATAATCGCTTAAATATCGCTTGAATAAGGTAAAATGAAGCCAAAATAAG CCTATAAAAAAGGGGAAATC
Downstream 100 bases:
>100_bases AGCCAACTTTAGCCAAGATTGTCTTTGTGTTGGCTCATATCAATGATGACTTCACAGCGTTCAATCGTGCTTAAGCGGTG GGCGATAACGATTAGGGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Haloacid Dehalogenase Domain Protein Hydrolase; HAD Family Hydrolase; HAD Superfamily Hydrolase; HAD-Superfamily Hydrolase; Haloacid Dehalogenase Domain-Containing Protein Hydrolase; Haloacid Dehalogenase/Epoxide Hydrolase Family Protein; Hydrolase; Haloacid Dehalogenase/Epoxide Hydrolase
Number of amino acids: Translated: 222; Mature: 221
Protein sequence:
>222_residues MALEVVLWDFDGVIFDSMHLKYEGFKALFQKHGNKNQENLKQFEVYHYQSGGISRNEKIQYFYNEILKTPIAQEEVGALA LEFGAIIEQKLFDRGHLNSEVMAFIDKHYKNHVFHIASAALHSELQVLCEFLGIIKYFKSVEGSPPNKPKIIANIIQKYA YNPSRMLMIGDSVNDYESAKANKVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFDLQNFIKE
Sequences:
>Translated_222_residues MALEVVLWDFDGVIFDSMHLKYEGFKALFQKHGNKNQENLKQFEVYHYQSGGISRNEKIQYFYNEILKTPIAQEEVGALA LEFGAIIEQKLFDRGHLNSEVMAFIDKHYKNHVFHIASAALHSELQVLCEFLGIIKYFKSVEGSPPNKPKIIANIIQKYA YNPSRMLMIGDSVNDYESAKANKVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFDLQNFIKE >Mature_221_residues ALEVVLWDFDGVIFDSMHLKYEGFKALFQKHGNKNQENLKQFEVYHYQSGGISRNEKIQYFYNEILKTPIAQEEVGALAL EFGAIIEQKLFDRGHLNSEVMAFIDKHYKNHVFHIASAALHSELQVLCEFLGIIKYFKSVEGSPPNKPKIIANIIQKYAY NPSRMLMIGDSVNDYESAKANKVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFDLQNFIKE
Specific function: Unknown
COG id: COG0546
COG function: function code R; Predicted phosphatases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25478; Mature: 25346
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALEVVLWDFDGVIFDSMHLKYEGFKALFQKHGNKNQENLKQFEVYHYQSGGISRNEKIQ CCEEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEECCCCCCCCHHHH YFYNEILKTPIAQEEVGALALEFGAIIEQKLFDRGHLNSEVMAFIDKHYKNHVFHIASAA HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH LHSELQVLCEFLGIIKYFKSVEGSPPNKPKIIANIIQKYAYNPSRMLMIGDSVNDYESAK HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHCC ANKVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFDLQNFIKE CCEEEEECCCHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHCC >Mature Secondary Structure ALEVVLWDFDGVIFDSMHLKYEGFKALFQKHGNKNQENLKQFEVYHYQSGGISRNEKIQ CEEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEECCCCCCCCHHHH YFYNEILKTPIAQEEVGALALEFGAIIEQKLFDRGHLNSEVMAFIDKHYKNHVFHIASAA HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH LHSELQVLCEFLGIIKYFKSVEGSPPNKPKIIANIIQKYAYNPSRMLMIGDSVNDYESAK HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHCC ANKVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFDLQNFIKE CCEEEEECCCHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA