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The map label for this gene is rsmE [H]

Identifier: 188527861

GI number: 188527861

Start: 1094958

End: 1095638

Strand: Direct

Name: rsmE [H]

Synonym: HPSH_05545

Alternate gene names: 188527861

Gene position: 1094958-1095638 (Clockwise)

Preceding gene: 188527860

Following gene: 188527864

Centisome position: 68.07

GC content: 41.7

Gene sequence:

>681_bases
ATGCGTTTTGTCTATCACCCTTTAGCCAAAGAGCCTGTTTTAAAAATAGAAGGCGAGAGTTATACGCATTTATACCGATC
AAGACGCGTCAAAAGCGCGAGTCGTTTGGATTTAAGAAATTTAAAAGACGGCTTTTTATACACCTATGAGCATGCAGAAA
TCACTAAAAAACATGCCCTTTTAAGGCTAGTGGGCGTGCAAGCGTTAGAGGTTATGGCTAGTAAAAAAACGCATTTGATT
TTAAGCGTGATTGAAATCAAAAGCGTTGAAAAAATTCTACCCTTTTTAAACCAGTTAGGCGTGAGCAAATTGAGTTTATT
CTATGCGGATTTTAGCCAACGCAATGAAAAAATAGACAGCGCCAAATTAGAGCGTTTTCAAAAGATTTTGATTCATTCTT
GCGAGCAATGCGGTAGGAGCGCTTTAATGGAATTGGAAGTGTTTCCAAACACTAAAGAGGTGTTAAACGCCTACCCTAAG
GCGAGCGTTTTGGATTTTAAGGGCGAAACCTTACCCGCAAGCGTGGGTTTTGAAAAAGGCGTTATCATAGGGCCTGAAGG
GGGCTTTAGCGGACAAGAAAGAGGGTGTTTTAAAGAGCGCGAAATTTATCGCATCCCGTTGGATATGGTGCTAAAATCTG
AGAGCGCATGCGTGTTTGTGGCGAGTGTCGCGCAAGTTTAG

Upstream 100 bases:

>100_bases
CGCTATCACTAAAAAGGAAAGGATGGAAGCGTATATTAAAAAGGCTAAAATCCTGTATTTTTTAGAAACGATTCTTATTG
TTGTGTTAATGGGCCTTTGA

Downstream 100 bases:

>100_bases
GGGGTTATTGGGGGTTTTAAATCTTAGAAAATCCACCCGTAATTAAAAAACACTTTAAAATGACTGCCCCCTTCATTCAA
AACAACAGAGTCCGCATAGA

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MRFVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLRLVGVQALEVMASKKTHLI
LSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAKLERFQKILIHSCEQCGRSALMELEVFPNTKEVLNAYPK
ASVLDFKGETLPASVGFEKGVIIGPEGGFSGQERGCFKEREIYRIPLDMVLKSESACVFVASVAQV

Sequences:

>Translated_226_residues
MRFVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLRLVGVQALEVMASKKTHLI
LSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAKLERFQKILIHSCEQCGRSALMELEVFPNTKEVLNAYPK
ASVLDFKGETLPASVGFEKGVIIGPEGGFSGQERGCFKEREIYRIPLDMVLKSESACVFVASVAQV
>Mature_226_residues
MRFVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLRLVGVQALEVMASKKTHLI
LSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAKLERFQKILIHSCEQCGRSALMELEVFPNTKEVLNAYPK
ASVLDFKGETLPASVGFEKGVIIGPEGGFSGQERGCFKEREIYRIPLDMVLKSESACVFVASVAQV

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 25569; Mature: 25569

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHAL
CCCEECCCCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEHHHHHHHHHHH
LRLVGVQALEVMASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDS
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
AKLERFQKILIHSCEQCGRSALMELEVFPNTKEVLNAYPKASVLDFKGETLPASVGFEKG
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCC
VIIGPEGGFSGQERGCFKEREIYRIPLDMVLKSESACVFVASVAQV
EEECCCCCCCCCCCCCCCCCCEEECCHHHHCCCCCCEEEEEEHHCC
>Mature Secondary Structure
MRFVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHAL
CCCEECCCCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEHHHHHHHHHHH
LRLVGVQALEVMASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDS
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
AKLERFQKILIHSCEQCGRSALMELEVFPNTKEVLNAYPKASVLDFKGETLPASVGFEKG
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCC
VIIGPEGGFSGQERGCFKEREIYRIPLDMVLKSESACVFVASVAQV
EEECCCCCCCCCCCCCCCCCCEEECCHHHHCCCCCCEEEEEEHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]