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The map label for this gene is sodB [H]

Identifier: 188527846

GI number: 188527846

Start: 1079634

End: 1080275

Strand: Direct

Name: sodB [H]

Synonym: HPSH_05460

Alternate gene names: 188527846

Gene position: 1079634-1080275 (Clockwise)

Preceding gene: 188527844

Following gene: 188527847

Centisome position: 67.12

GC content: 39.25

Gene sequence:

>642_bases
ATGTTTACATTACGAGAATTGCCTTTTGCTAAAGACAGCATGGGAGATTTTTTAAGCCCTGTAGCGTTTGATTTCCACCA
TGGGAAACACCATCAAACTTATGTGAATAATTTGAACAACCTCATCAAAGGCACGGATTTTGAGAAAAGTTCTTTGTTTG
CTATTTTGACAAAATCTAGCGGAGGCGTGTTTAATAACGCCGCTCAAATTTATAACCACGATTTTTATTGGGATTGTCTA
AGCCCCAAAGCGACTGCCTTAAGCGATGAATTAAAAGGGGCTTTAGAAAAAGATTTCGGCTCATTGGAAAAATTTAAAGA
AGACTTCATTAAGAGTGCGACCACTTTGTTTGGCTCTGGTTGGAATTGGGCAGCGTATAATTTAGACACTCAAAAAATTG
AAATCATTCAAACCAGCAACGCTCAAACCCCAGTTACGGATAAAAAAGTGCCGCTTTTAGTGGTGGATGTGTGGGAGCAT
GCTTATTATATTGACCACAAAAACGCGCGCCCTGTGTATCTGGAAAAATTCTATGGGCATATCAATTGGCATTTTGTTTC
TCAGTGCTATGAGTGGGCGAAAAAAGAAGGCTTAGGCTCAGTGGATTACTACATCAACGAGTTGGTGCATAAAAAAGCTT
AA

Upstream 100 bases:

>100_bases
AATCCACAAAATTTGCATAACGATCAATTTTTAAGAAAAGATTTACCAAAAAGTATTAAAAAATGATTACAATACGGCTA
TCTAATCACAAGGAGAAAAC

Downstream 100 bases:

>100_bases
GCGTTATTGCTGTTGTGGTTTAAAGATTTTTAAACCACGCTTCTTTTTTGGATGAAAGACACTCTGTTTAACCAATCTCT
AAACAAACGCTTTTGTTTTG

Product: iron-dependent superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MFTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFAILTKSSGGVFNNAAQIYNHDFYWDCL
SPKATALSDELKGALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEH
AYYIDHKNARPVYLEKFYGHINWHFVSQCYEWAKKEGLGSVDYYINELVHKKA

Sequences:

>Translated_213_residues
MFTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFAILTKSSGGVFNNAAQIYNHDFYWDCL
SPKATALSDELKGALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEH
AYYIDHKNARPVYLEKFYGHINWHFVSQCYEWAKKEGLGSVDYYINELVHKKA
>Mature_213_residues
MFTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFAILTKSSGGVFNNAAQIYNHDFYWDCL
SPKATALSDELKGALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEH
AYYIDHKNARPVYLEKFYGHINWHFVSQCYEWAKKEGLGSVDYYINELVHKKA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=198, Percent_Identity=35.8585858585859, Blast_Score=122, Evalue=2e-28,
Organism=Homo sapiens, GI67782305, Length=198, Percent_Identity=35.8585858585859, Blast_Score=122, Evalue=2e-28,
Organism=Homo sapiens, GI67782309, Length=195, Percent_Identity=31.7948717948718, Blast_Score=102, Evalue=3e-22,
Organism=Escherichia coli, GI1787946, Length=188, Percent_Identity=53.7234042553192, Blast_Score=210, Evalue=7e-56,
Organism=Escherichia coli, GI1790342, Length=196, Percent_Identity=36.2244897959184, Blast_Score=133, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17569479, Length=195, Percent_Identity=34.3589743589744, Blast_Score=111, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17506561, Length=197, Percent_Identity=34.010152284264, Blast_Score=110, Evalue=7e-25,
Organism=Saccharomyces cerevisiae, GI6321796, Length=211, Percent_Identity=29.3838862559242, Blast_Score=89, Evalue=7e-19,
Organism=Drosophila melanogaster, GI17136812, Length=199, Percent_Identity=36.6834170854271, Blast_Score=130, Evalue=9e-31,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 24474; Mature: 24474

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFAILTKSS
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
GGVFNNAAQIYNHDFYWDCLSPKATALSDELKGALEKDFGSLEKFKEDFIKSATTLFGSG
CCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
WNWAAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYGH
CCEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCHHHHHHCC
INWHFVSQCYEWAKKEGLGSVDYYINELVHKKA
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MFTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFAILTKSS
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
GGVFNNAAQIYNHDFYWDCLSPKATALSDELKGALEKDFGSLEKFKEDFIKSATTLFGSG
CCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
WNWAAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYGH
CCEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCHHHHHHCC
INWHFVSQCYEWAKKEGLGSVDYYINELVHKKA
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]