| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is dorA [H]
Identifier: 188527828
GI number: 188527828
Start: 1057257
End: 1059647
Strand: Reverse
Name: dorA [H]
Synonym: HPSH_05370
Alternate gene names: 188527828
Gene position: 1059647-1057257 (Counterclockwise)
Preceding gene: 188527829
Following gene: 188527827
Centisome position: 65.88
GC content: 41.7
Gene sequence:
>2391_bases ATGTCCATTTCACGCAGAAGTATCCTAACAAAAATCCCAATCGCACTCGCTAGTGCTAATGTTTTAAAAGCTGTTGGTGT TTTTGAAAAAGTAGAATCCATTCCGCATGCAACGCATTTTGGCCCCTTTATCGCAAAGGTTCAAAATGGAGTGATTAAAG ATATTATCCCCCAAAAGAGCGATTATAACCCTACCATGATGTTAAAAGCGATGGTTGATAGGGTGTATTCAGATAGTAGG GTGAAGTATCCTTGCGTGCGTAAGAGCTTCTTAGAAAACAAAAAAAACCACAAAGAATTGCGCGGGAGAGAAGAGTTTGT GCGCGTGAGTTGGGATGTGGCACTGGATTTGGCGGCTAAAAAGCTTAAAGAAATCCCTAAAGAAAACATCTATAATGCTA GTTATGGTGGCTGGGGGCATGCGGGCAGCTTGCATCGTTGTCATCATTTGGCATGGCGTTTTTTTAACACGACTTTAGGG GGGGCTATTGGCACTGATGGGGAATATGGCAATGGTGCGGCTGCAAAAATAAACCCTATGATTGTAGGGGATATGGAAGT TTATTCGCAACAAACCACTCATGAAGAGATGATTAAAAATTGCAAGGTGTATGTCATGTGGGGGGCGGATTTATTCAAGT GCAACCGCATTGATTATTTCGTGCCAAACCATGTCAATGATGGCTACTACCCTAAATATAAAAGAGCTGGTATCAAATTC ATTAGTATCGATCCCATTTATACCGAAACCGCTCAAGCCTTTAGCGCTGAATGGATACCCATTCGCCCTAATACTGATGT AGCGTTAATGCTAGGCATGATGCATTATCTTTACACGAGCAATCAATACGATAAAGCGTTTATCGCTAAATACACTGATG GCTTTGATAAATTCTTACCCTATTTGCTAGGAGAGAGCGATAATGCGCCTAAGACTTTGGAGTGGGCGTCTCAAATCACT GGAGTGAGCGCAGAAAAAATCAAAGAATTAGCGGATTTGTTTGTTTCTAAACGCACTTTTTTAGCGGGTAATTGGGCCAT GCAAAGAGCTCAGTATGGCGAGCAACCTGATTGGGCGTTAATTGTTTTAGCCAGCATGATTGGTCAAGTGGGTTTATCTG GTGGGGGCTTTGGCTTTTCTATGCATTATGGAGGAAACGCTCAAGCAAGCTCAGGGGCAAGAATTGTTCCGATGATTTCA CAAGGGCATAATTCTGTAAAAAGCGTTATTCCAGCATCTAGAATTTCTGAAGCGATTTTAAATCCGGATAAAGAAATTGA TTTTATGGGTAAAAAACTCAAATTGCCTAAAATCAAAATGATTTATAATTGTGGGGCGGATTTATTGGGGCATGAAGCTG ATACAAACGAGCTGATTCGCGCTTTAAGGACCTTAGATTGCGTGATCGTGCATGAGCCTTGGTGGACGCCTACGGCAAAA TTTGCTGATATTGTCTTTGCTTCCACTAGCACTATGGAAAGAGATGATATTACTTTTGGAGGGAGTTATTCTAAAAATGT GGTTTATGCCATGCGTAAGGTGATAGAGCCTGTTTATGAATCTAAAGACGATTATGAGATTTTCAGACAGCTTGCTTTAC GCATTGGGGGCAATGAAACAGAGCAGAAATTCACTGAATCTAAGAGTTATATGGAATGGATTAAGGGCCTTTATGAAAAA AGCGATGGTCCTACTTTGAAATCGTTTGATCAGTTTTGGAGGGATGGCTTTGTGGAGTTTGAAATCCCTGAAAATGCGAG AAAGTTTGTGCGTCATGCGAAATTCAGGCAAGACCCTATTAATAATAAGCTGGATACAGAGAGCGGGAAAATTCAAATTT TTTCTCAAAAATGCGCGGATTTTAAACGGGCCGATTTTAAAGGGCATCCTACTTGGTTTGAGCCAGCTGAGTGGCTAGGC TCTAAAATGGCTGAGATTTACCCGTTCCATTTAATCTCTCCGCACCCAAAATACCGTGTCAATTCACAGCTTGATAACAC TTGGGTTAGGAATGTGTATAAAATTCAAGGCAGAGAGCCTGTAACGATCAACGAACTAGACGCTAATAAATTAGGCATTA GGCATGGTGAAATTGTAGAAGTGTTTAACGCTAGGGGGAGGTTGTTAGCAGGGGCGTTTGTAACTAAGAATATCCGTCAA GGGGTTTTGAGTATCCAAAAAGGGGCGTGGTATGACCCAGAAGATGTGGGGGTTAGAAACCCACGATGCAATGCAGGGCA TGTGAATACACTCACTTCTTTACGCCCCACAAGCAGCATGACGCAAGCCATTTCAGCCAATACCGCCTTAGTTAATATCA GAAAACTCAGAAGGTATGAATTAATCAAGCCCTATCATTCCATTTCAACACCAAGCATTATTGGGGCTTAA
Upstream 100 bases:
>100_bases GTTTTAAACTAACACCCGGTCTTTGCGGGCTTATTAGCGGTAATTTATGTGAATATATGTTAGAATTTGGGGTATTTTAA CAGAAGCTTGAAGGAGAACC
Downstream 100 bases:
>100_bases AAGGAGTGAAAATACTAGCATGAGAGTGTTTTAGAAAGACTTGAGCGCTAAAGACTTGAGCGCTAGCCAAGCTAAAGCGT AATTCTCAATTTTTATATTA
Product: biotin sulfoxide reductase (bisC)
Products: NA
Alternate protein names: DMSO reductase; DMSOR [H]
Number of amino acids: Translated: 796; Mature: 795
Protein sequence:
>796_residues MSISRRSILTKIPIALASANVLKAVGVFEKVESIPHATHFGPFIAKVQNGVIKDIIPQKSDYNPTMMLKAMVDRVYSDSR VKYPCVRKSFLENKKNHKELRGREEFVRVSWDVALDLAAKKLKEIPKENIYNASYGGWGHAGSLHRCHHLAWRFFNTTLG GAIGTDGEYGNGAAAKINPMIVGDMEVYSQQTTHEEMIKNCKVYVMWGADLFKCNRIDYFVPNHVNDGYYPKYKRAGIKF ISIDPIYTETAQAFSAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLPYLLGESDNAPKTLEWASQIT GVSAEKIKELADLFVSKRTFLAGNWAMQRAQYGEQPDWALIVLASMIGQVGLSGGGFGFSMHYGGNAQASSGARIVPMIS QGHNSVKSVIPASRISEAILNPDKEIDFMGKKLKLPKIKMIYNCGADLLGHEADTNELIRALRTLDCVIVHEPWWTPTAK FADIVFASTSTMERDDITFGGSYSKNVVYAMRKVIEPVYESKDDYEIFRQLALRIGGNETEQKFTESKSYMEWIKGLYEK SDGPTLKSFDQFWRDGFVEFEIPENARKFVRHAKFRQDPINNKLDTESGKIQIFSQKCADFKRADFKGHPTWFEPAEWLG SKMAEIYPFHLISPHPKYRVNSQLDNTWVRNVYKIQGREPVTINELDANKLGIRHGEIVEVFNARGRLLAGAFVTKNIRQ GVLSIQKGAWYDPEDVGVRNPRCNAGHVNTLTSLRPTSSMTQAISANTALVNIRKLRRYELIKPYHSISTPSIIGA
Sequences:
>Translated_796_residues MSISRRSILTKIPIALASANVLKAVGVFEKVESIPHATHFGPFIAKVQNGVIKDIIPQKSDYNPTMMLKAMVDRVYSDSR VKYPCVRKSFLENKKNHKELRGREEFVRVSWDVALDLAAKKLKEIPKENIYNASYGGWGHAGSLHRCHHLAWRFFNTTLG GAIGTDGEYGNGAAAKINPMIVGDMEVYSQQTTHEEMIKNCKVYVMWGADLFKCNRIDYFVPNHVNDGYYPKYKRAGIKF ISIDPIYTETAQAFSAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLPYLLGESDNAPKTLEWASQIT GVSAEKIKELADLFVSKRTFLAGNWAMQRAQYGEQPDWALIVLASMIGQVGLSGGGFGFSMHYGGNAQASSGARIVPMIS QGHNSVKSVIPASRISEAILNPDKEIDFMGKKLKLPKIKMIYNCGADLLGHEADTNELIRALRTLDCVIVHEPWWTPTAK FADIVFASTSTMERDDITFGGSYSKNVVYAMRKVIEPVYESKDDYEIFRQLALRIGGNETEQKFTESKSYMEWIKGLYEK SDGPTLKSFDQFWRDGFVEFEIPENARKFVRHAKFRQDPINNKLDTESGKIQIFSQKCADFKRADFKGHPTWFEPAEWLG SKMAEIYPFHLISPHPKYRVNSQLDNTWVRNVYKIQGREPVTINELDANKLGIRHGEIVEVFNARGRLLAGAFVTKNIRQ GVLSIQKGAWYDPEDVGVRNPRCNAGHVNTLTSLRPTSSMTQAISANTALVNIRKLRRYELIKPYHSISTPSIIGA >Mature_795_residues SISRRSILTKIPIALASANVLKAVGVFEKVESIPHATHFGPFIAKVQNGVIKDIIPQKSDYNPTMMLKAMVDRVYSDSRV KYPCVRKSFLENKKNHKELRGREEFVRVSWDVALDLAAKKLKEIPKENIYNASYGGWGHAGSLHRCHHLAWRFFNTTLGG AIGTDGEYGNGAAAKINPMIVGDMEVYSQQTTHEEMIKNCKVYVMWGADLFKCNRIDYFVPNHVNDGYYPKYKRAGIKFI SIDPIYTETAQAFSAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLPYLLGESDNAPKTLEWASQITG VSAEKIKELADLFVSKRTFLAGNWAMQRAQYGEQPDWALIVLASMIGQVGLSGGGFGFSMHYGGNAQASSGARIVPMISQ GHNSVKSVIPASRISEAILNPDKEIDFMGKKLKLPKIKMIYNCGADLLGHEADTNELIRALRTLDCVIVHEPWWTPTAKF ADIVFASTSTMERDDITFGGSYSKNVVYAMRKVIEPVYESKDDYEIFRQLALRIGGNETEQKFTESKSYMEWIKGLYEKS DGPTLKSFDQFWRDGFVEFEIPENARKFVRHAKFRQDPINNKLDTESGKIQIFSQKCADFKRADFKGHPTWFEPAEWLGS KMAEIYPFHLISPHPKYRVNSQLDNTWVRNVYKIQGREPVTINELDANKLGIRHGEIVEVFNARGRLLAGAFVTKNIRQG VLSIQKGAWYDPEDVGVRNPRCNAGHVNTLTSLRPTSSMTQAISANTALVNIRKLRRYELIKPYHSISTPSIIGA
Specific function: Terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI87081994, Length=803, Percent_Identity=37.359900373599, Blast_Score=535, Evalue=1e-153, Organism=Escherichia coli, GI1787231, Length=774, Percent_Identity=39.6640826873385, Blast_Score=523, Evalue=1e-149, Organism=Escherichia coli, GI145693196, Length=769, Percent_Identity=38.4915474642393, Blast_Score=523, Evalue=1e-149, Organism=Escherichia coli, GI87081797, Length=748, Percent_Identity=31.1497326203209, Blast_Score=278, Evalue=1e-75, Organism=Escherichia coli, GI1787870, Length=755, Percent_Identity=30.9933774834437, Blast_Score=265, Evalue=7e-72, Organism=Escherichia coli, GI171474008, Length=757, Percent_Identity=28.9299867899604, Blast_Score=246, Evalue=3e-66, Organism=Escherichia coli, GI3868721, Length=644, Percent_Identity=22.8260869565217, Blast_Score=113, Evalue=6e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006658 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: =1.7.2.3 [H]
Molecular weight: Translated: 89962; Mature: 89831
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSISRRSILTKIPIALASANVLKAVGVFEKVESIPHATHFGPFIAKVQNGVIKDIIPQKS CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHCCCCC DYNPTMMLKAMVDRVYSDSRVKYPCVRKSFLENKKNHKELRGREEFVRVSWDVALDLAAK CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHCCHHHHEEEHHHHHHHHHHH KLKEIPKENIYNASYGGWGHAGSLHRCHHLAWRFFNTTLGGAIGTDGEYGNGAAAKINPM HHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCE IVGDMEVYSQQTTHEEMIKNCKVYVMWGADLFKCNRIDYFVPNHVNDGYYPKYKRAGIKF EEECHHHHHHHCHHHHHHHCCEEEEEECCCEEEECCEEEECCCCCCCCCCCCHHHCCEEE ISIDPIYTETAQAFSAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLP EEECCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHH YLLGESDNAPKTLEWASQITGVSAEKIKELADLFVSKRTFLAGNWAMQRAQYGEQPDWAL HHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECHHHHHHHHCCCCCCHHH IVLASMIGQVGLSGGGFGFSMHYGGNAQASSGARIVPMISQGHNSVKSVIPASRISEAIL HHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEHHCCCHHHHHHCCHHHHHHHHC NPDKEIDFMGKKLKLPKIKMIYNCGADLLGHEADTNELIRALRTLDCVIVHEPWWTPTAK CCCCCHHHCCCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHCEEEEECCCCCCCHH FADIVFASTSTMERDDITFGGSYSKNVVYAMRKVIEPVYESKDDYEIFRQLALRIGGNET HHHEEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHH EQKFTESKSYMEWIKGLYEKSDGPTLKSFDQFWRDGFVEFEIPENARKFVRHAKFRQDPI HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCC NNKLDTESGKIQIFSQKCADFKRADFKGHPTWFEPAEWLGSKMAEIYPFHLISPHPKYRV CCCCCCCCCCEEEEEHHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCC NSQLDNTWVRNVYKIQGREPVTINELDANKLGIRHGEIVEVFNARGRLLAGAFVTKNIRQ CCCHHHHHHHHHHEECCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCEEEHHHHHHHHHH GVLSIQKGAWYDPEDVGVRNPRCNAGHVNTLTSLRPTSSMTQAISANTALVNIRKLRRYE HHHHHHCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHH LIKPYHSISTPSIIGA HHCHHHCCCCCCCCCC >Mature Secondary Structure SISRRSILTKIPIALASANVLKAVGVFEKVESIPHATHFGPFIAKVQNGVIKDIIPQKS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHCCCCC DYNPTMMLKAMVDRVYSDSRVKYPCVRKSFLENKKNHKELRGREEFVRVSWDVALDLAAK CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHCCHHHHEEEHHHHHHHHHHH KLKEIPKENIYNASYGGWGHAGSLHRCHHLAWRFFNTTLGGAIGTDGEYGNGAAAKINPM HHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCE IVGDMEVYSQQTTHEEMIKNCKVYVMWGADLFKCNRIDYFVPNHVNDGYYPKYKRAGIKF EEECHHHHHHHCHHHHHHHCCEEEEEECCCEEEECCEEEECCCCCCCCCCCCHHHCCEEE ISIDPIYTETAQAFSAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLP EEECCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHH YLLGESDNAPKTLEWASQITGVSAEKIKELADLFVSKRTFLAGNWAMQRAQYGEQPDWAL HHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECHHHHHHHHCCCCCCHHH IVLASMIGQVGLSGGGFGFSMHYGGNAQASSGARIVPMISQGHNSVKSVIPASRISEAIL HHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEHHCCCHHHHHHCCHHHHHHHHC NPDKEIDFMGKKLKLPKIKMIYNCGADLLGHEADTNELIRALRTLDCVIVHEPWWTPTAK CCCCCHHHCCCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHCEEEEECCCCCCCHH FADIVFASTSTMERDDITFGGSYSKNVVYAMRKVIEPVYESKDDYEIFRQLALRIGGNET HHHEEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHH EQKFTESKSYMEWIKGLYEKSDGPTLKSFDQFWRDGFVEFEIPENARKFVRHAKFRQDPI HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCC NNKLDTESGKIQIFSQKCADFKRADFKGHPTWFEPAEWLGSKMAEIYPFHLISPHPKYRV CCCCCCCCCCEEEEEHHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCC NSQLDNTWVRNVYKIQGREPVTINELDANKLGIRHGEIVEVFNARGRLLAGAFVTKNIRQ CCCHHHHHHHHHHEECCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCEEEHHHHHHHHHH GVLSIQKGAWYDPEDVGVRNPRCNAGHVNTLTSLRPTSSMTQAISANTALVNIRKLRRYE HHHHHHCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHH LIKPYHSISTPSIIGA HHCHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8856102; 8890911; 8890912; 10835270; 10985771 [H]