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The map label for this gene is yggB [C]

Identifier: 188527800

GI number: 188527800

Start: 1026463

End: 1027287

Strand: Reverse

Name: yggB [C]

Synonym: HPSH_05200

Alternate gene names: 188527800

Gene position: 1027287-1026463 (Counterclockwise)

Preceding gene: 188527801

Following gene: 188527799

Centisome position: 63.86

GC content: 38.55

Gene sequence:

>825_bases
ATGGATGAAATTAAAACGCTGTTAGTGGATTTTTTCCCGCAGGCAAAGCATTTTGGGATAATCTTGATCAAGGCTGTCGT
TGTCTTTTGTATAGGTTTTTATTTTTCGTTTTTCTTACAAAAAAAAACCTTGAAACTTTTATCCAAAAAGGATGAGATTT
TAGCGAATTTTGTCGCGCAGGTTACTTTTATCTTAACCCTTATCATCACCACAATCATTACGCTCAGCACGCTAGGCGTG
CAAACCACCTCTATTATCACTGTTTTAGGAACGGTGGGGATTGCTGTGGCGTTGGCTTTAAAAGATTATCTTTCAAGCAT
TGCTGGAGGGATAATCCTTATCATTTTACACCCTTTCAAAAAAGGAGACATCATTGAAATCTCTGGCCTAGAGGGCAAAG
TAGAAGCGCTCAATTTTTTTAATACCTCTTTACGCTTGCATGACGGGCGTTTGGCGGTTTTGCCCAATAAAAGTGTCGCT
AATTCTAATATTATCAATAGCAATAACACTGCATGTCGGCGCATTGAATGGGTTTGTGGGGTAGGGTATGGGAGCGATAT
TGAACTAGTGCATAAGACGATAAAAGATGTTATTGATACAATGGAAAAAATTGATAAAAACATGCCCACTTTTATTGGAA
TCACGGATTTTGGATCCAGCTCATTGAATTTCACCATTAGAGTTTGGGCAAAGATTGAAGACGGGATCTTTAATGTGCGC
AGCGAACTCATTGAACGCATTAAAAACGCCCTAGACGCTAACCACATTGAAATCCCTTTCAACAAGCTAGATATTGCTAT
TAAAAATCAGGACTCTTCTAAGTGA

Upstream 100 bases:

>100_bases
CTATCCAATAGCGCGTTTCAAAGCTTCACTATTAAATATTCGCAGAAAAGATTGGAACTTTATGGAAAAGTTAATCAATT
TATTTTAAAAGGAAAAATTT

Downstream 100 bases:

>100_bases
TTGGTGTGAGATGCATTGCAGTAATACTTGAATTTTAAAGGAGTAACTCATATTAAGCGATTTCAAAAACATTTTCATCG
GTGCAAATAATTCTAAACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MDEIKTLLVDFFPQAKHFGIILIKAVVVFCIGFYFSFFLQKKTLKLLSKKDEILANFVAQVTFILTLIITTIITLSTLGV
QTTSIITVLGTVGIAVALALKDYLSSIAGGIILIILHPFKKGDIIEISGLEGKVEALNFFNTSLRLHDGRLAVLPNKSVA
NSNIINSNNTACRRIEWVCGVGYGSDIELVHKTIKDVIDTMEKIDKNMPTFIGITDFGSSSLNFTIRVWAKIEDGIFNVR
SELIERIKNALDANHIEIPFNKLDIAIKNQDSSK

Sequences:

>Translated_274_residues
MDEIKTLLVDFFPQAKHFGIILIKAVVVFCIGFYFSFFLQKKTLKLLSKKDEILANFVAQVTFILTLIITTIITLSTLGV
QTTSIITVLGTVGIAVALALKDYLSSIAGGIILIILHPFKKGDIIEISGLEGKVEALNFFNTSLRLHDGRLAVLPNKSVA
NSNIINSNNTACRRIEWVCGVGYGSDIELVHKTIKDVIDTMEKIDKNMPTFIGITDFGSSSLNFTIRVWAKIEDGIFNVR
SELIERIKNALDANHIEIPFNKLDIAIKNQDSSK
>Mature_274_residues
MDEIKTLLVDFFPQAKHFGIILIKAVVVFCIGFYFSFFLQKKTLKLLSKKDEILANFVAQVTFILTLIITTIITLSTLGV
QTTSIITVLGTVGIAVALALKDYLSSIAGGIILIILHPFKKGDIIEISGLEGKVEALNFFNTSLRLHDGRLAVLPNKSVA
NSNIINSNNTACRRIEWVCGVGYGSDIELVHKTIKDVIDTMEKIDKNMPTFIGITDFGSSSLNFTIRVWAKIEDGIFNVR
SELIERIKNALDANHIEIPFNKLDIAIKNQDSSK

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=260, Percent_Identity=32.3076923076923, Blast_Score=164, Evalue=7e-42,
Organism=Escherichia coli, GI1786670, Length=220, Percent_Identity=25, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787591, Length=197, Percent_Identity=23.3502538071066, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 30346; Mature: 30346

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEIKTLLVDFFPQAKHFGIILIKAVVVFCIGFYFSFFLQKKTLKLLSKKDEILANFVAQ
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTFILTLIITTIITLSTLGVQTTSIITVLGTVGIAVALALKDYLSSIAGGIILIILHPFK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
KGDIIEISGLEGKVEALNFFNTSLRLHDGRLAVLPNKSVANSNIINSNNTACRRIEWVCG
CCCEEEEECCCCCHHHHHHHCCEEEEECCEEEEECCCCCCCCCCCCCCCCHHHEEEEEEE
VGYGSDIELVHKTIKDVIDTMEKIDKNMPTFIGITDFGSSSLNFTIRVWAKIEDGIFNVR
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEEEHHCHHHHHH
SELIERIKNALDANHIEIPFNKLDIAIKNQDSSK
HHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCC
>Mature Secondary Structure
MDEIKTLLVDFFPQAKHFGIILIKAVVVFCIGFYFSFFLQKKTLKLLSKKDEILANFVAQ
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTFILTLIITTIITLSTLGVQTTSIITVLGTVGIAVALALKDYLSSIAGGIILIILHPFK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
KGDIIEISGLEGKVEALNFFNTSLRLHDGRLAVLPNKSVANSNIINSNNTACRRIEWVCG
CCCEEEEECCCCCHHHHHHHCCEEEEECCEEEEECCCCCCCCCCCCCCCCHHHEEEEEEE
VGYGSDIELVHKTIKDVIDTMEKIDKNMPTFIGITDFGSSSLNFTIRVWAKIEDGIFNVR
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEEEHHCHHHHHH
SELIERIKNALDANHIEIPFNKLDIAIKNQDSSK
HHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]