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The map label for this gene is 188527786

Identifier: 188527786

GI number: 188527786

Start: 1007902

End: 1008189

Strand: Reverse

Name: 188527786

Synonym: HPSH_05110

Alternate gene names: NA

Gene position: 1008189-1007902 (Counterclockwise)

Preceding gene: 188527787

Following gene: 188527785

Centisome position: 62.68

GC content: 39.58

Gene sequence:

>288_bases
ATGTATGCCGTAACCTTTGATCTTGACACCAATTGCCTGAACGAAAACGCAGTGAATCTCTCAAAAGTTTATTCGGATAT
TCGCAAATTCATGGAACAACATGGCTTTAAATGGCAACAAGGCAGCGTGTATTTTGGCGATGAGACCATAAACGCCGTTA
CTTGCGTCGCTACGGTGCAAATTTTAGCCAAGCAAATACCAAGCTTTGCGATCTGTGTTAAAGATGTGAGGATGCTAAAA
ATAGAAGAAAACAACGATTTAATGCCAGCTATCAAAATTGTTTTGTGA

Upstream 100 bases:

>100_bases
AAATTGTTTTATTCGCAAACACATGGGTTGTAAAACGCATGCGCTAATCAAACGGATTTCAGTAAAATATGCTATAACAC
AAACAAATAAAGGAGTGAAG

Downstream 100 bases:

>100_bases
AATTGAGTATAATAAGAGTCGCATAAATTGTATTAGGAATTTGTAATGATTGTTATTCTTAAAAATTCGCCTTCTCTCTC
TCTCTCTCTCTCTCTAGTCA

Product: virulence associated protein D (vapD)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MYAVTFDLDTNCLNENAVNLSKVYSDIRKFMEQHGFKWQQGSVYFGDETINAVTCVATVQILAKQIPSFAICVKDVRMLK
IEENNDLMPAIKIVL

Sequences:

>Translated_95_residues
MYAVTFDLDTNCLNENAVNLSKVYSDIRKFMEQHGFKWQQGSVYFGDETINAVTCVATVQILAKQIPSFAICVKDVRMLK
IEENNDLMPAIKIVL
>Mature_95_residues
MYAVTFDLDTNCLNENAVNLSKVYSDIRKFMEQHGFKWQQGSVYFGDETINAVTCVATVQILAKQIPSFAICVKDVRMLK
IEENNDLMPAIKIVL

Specific function: Unknown

COG id: COG3309

COG function: function code S; Uncharacterized virulence-associated protein D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the vapD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016368
- InterPro:   IPR019199 [H]

Pfam domain/function: PF09827 CRISPR_Cas2 [H]

EC number: NA

Molecular weight: Translated: 10792; Mature: 10792

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYAVTFDLDTNCLNENAVNLSKVYSDIRKFMEQHGFKWQQGSVYFGDETINAVTCVATVQ
CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHH
ILAKQIPSFAICVKDVRMLKIEENNDLMPAIKIVL
HHHHHCCCHHHHHCCEEEEEECCCCCCCCEEEEEC
>Mature Secondary Structure
MYAVTFDLDTNCLNENAVNLSKVYSDIRKFMEQHGFKWQQGSVYFGDETINAVTCVATVQ
CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHH
ILAKQIPSFAICVKDVRMLKIEENNDLMPAIKIVL
HHHHHCCCHHHHHCCEEEEEECCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]