Click here to switch to the map view.

The map label for this gene is tdcF [C]

Identifier: 188527767

GI number: 188527767

Start: 986805

End: 987182

Strand: Reverse

Name: tdcF [C]

Synonym: HPSH_04970

Alternate gene names: 188527767

Gene position: 987182-986805 (Counterclockwise)

Preceding gene: 188527768

Following gene: 188527766

Centisome position: 61.37

GC content: 40.48

Gene sequence:

>378_bases
ATGAAAGAAGTCATTCATTCAACGCTAGCCCCAAAAGCGATAGGTCCTTATTCTCAAGCTATCGCTACTAACGATCTTGT
TTTTGTCTCTGGGCAATTGGGTATTGATGCGAGCACCGGCGAATTTAAAGGCACGGATATTCATTCTCAAACCACGCAGT
CAATGGAAAATATCAAAGCGATTTTAAAAGAAGCAGGGTTAGGGATGGATAGCGTGGTTAAAACGACTATTTTATTGAAA
AGTTTAGACGATTTTGCGGTGGTGAATGAAATCTATGGGAGTTATTTTAAAGAGCCTTATCCGGCCAGAGCGACCTTTCA
AGTGGCTAAACTGCCTAAAGACGCTTTAGTAGAAATTGAAGCGATAGCCATTAAGTAA

Upstream 100 bases:

>100_bases
AGATGAAAATTCAAAGCGTTTTGCGCTCATTTTTTATTTCTTTATTAATTTGATTGCATAATAATAGCTGTCATAACACA
TAATCATAGGAGTTTCAATC

Downstream 100 bases:

>100_bases
TTTTATTCAAGGGATTATCAGCATGAAAAAAGAGGTCGTGGTAATAGGCGGTGGGATTGTAGGGCTTTCTTGTGCGTATT
CTATGCATAAATTAGGGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDASTGEFKGTDIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLK
SLDDFAVVNEIYGSYFKEPYPARATFQVAKLPKDALVEIEAIAIK

Sequences:

>Translated_125_residues
MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDASTGEFKGTDIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLK
SLDDFAVVNEIYGSYFKEPYPARATFQVAKLPKDALVEIEAIAIK
>Mature_125_residues
MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDASTGEFKGTDIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLK
SLDDFAVVNEIYGSYFKEPYPARATFQVAKLPKDALVEIEAIAIK

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=47.2, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI87082213, Length=128, Percent_Identity=44.53125, Blast_Score=119, Evalue=8e-29,
Organism=Escherichia coli, GI87082396, Length=128, Percent_Identity=43.75, Blast_Score=116, Evalue=4e-28,
Organism=Escherichia coli, GI1787245, Length=122, Percent_Identity=31.1475409836066, Blast_Score=67, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71982075, Length=123, Percent_Identity=54.4715447154472, Blast_Score=142, Evalue=4e-35,
Organism=Caenorhabditis elegans, GI25148896, Length=123, Percent_Identity=54.4715447154472, Blast_Score=142, Evalue=5e-35,
Organism=Caenorhabditis elegans, GI71982068, Length=123, Percent_Identity=54.4715447154472, Blast_Score=142, Evalue=5e-35,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=34.7107438016529, Blast_Score=84, Evalue=6e-18,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=37, Blast_Score=70, Evalue=6e-14,
Organism=Drosophila melanogaster, GI19921376, Length=124, Percent_Identity=45.1612903225806, Blast_Score=119, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13475; Mature: 13475

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDASTGEFKGTDIHSQTTQSMENIKA
CHHHHHHHCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
ILKEAGLGMDSVVKTTILLKSLDDFAVVNEIYGSYFKEPYPARATFQVAKLPKDALVEIE
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHCCHHHHEEEE
AIAIK
EEEEC
>Mature Secondary Structure
MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDASTGEFKGTDIHSQTTQSMENIKA
CHHHHHHHCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
ILKEAGLGMDSVVKTTILLKSLDDFAVVNEIYGSYFKEPYPARATFQVAKLPKDALVEIE
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHCCHHHHEEEE
AIAIK
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]