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The map label for this gene is yaaJ [C]

Identifier: 188527765

GI number: 188527765

Start: 984157

End: 985509

Strand: Reverse

Name: yaaJ [C]

Synonym: HPSH_04960

Alternate gene names: 188527765

Gene position: 985509-984157 (Counterclockwise)

Preceding gene: 188527766

Following gene: 188527764

Centisome position: 61.27

GC content: 43.39

Gene sequence:

>1353_bases
ATGGAAACGATTGATTCGGTGGTGCGTTTGTTATCTAATTTTGTGTGGGGGATTCCCATGCAAATTTTATTAGTAGGCAC
CGGCTTGTTTTTAACCTTCTATCTTAGGGGTTTGCAATTCAGTAAGATTTTTTATGCGATCAAAATCCTTTTTGACAAAG
AGTCCCAATCTAAGGGCGACATTTCGCAATTTTCCGCCCTCATGCTCTCTTTAGGGGCAACTGTAGGCATTGGGAGTATC
GTAGGCGTAGCGACCGCTATCAGCATTGCAGGGCCAGGTGCGGTGTTTTGGATGTGGGTTACTGGGCTTGTTGGCATGGC
GACTAAGTATTCTGAGGGGATTTTAGCGGTGAAATACCGGGAAAAAGGGGCGTTTGGATACAACGGAGGGCCTATGTATT
ACATCAAAAACGGCCTTAACATGCCCAAACTCGCCATGGCGTTTGCGATTTTTACGATTATTGCAAGCATTGGCACCGGT
AACATGACGCAATCTAATGCGGTTTCTTCCATTTTAAGCGAACAAGCGAACTTGCCTAGTTGGGTTTCAGGCTTATTGCT
CACTCTTTTAACCGCTGTTATTGTCATAGGGGGGATTAAATCCATTGGCAAATTCACTTCTTACTTAGCTCCTATTATGG
TGCTTTTGTATTTGATCGCCATTCTTTTTATTATTTTTAACCATTTTGATTTGGCCATTCAAGCGATCAAACTCATTTTT
GAAGAAGCCTTTAACCCTAAACCCGTTGTGGGCGGAGCGAGCGGCGCGTTGGTAGCTACGATGATAAAAACGGGCGTGGC
TAGGGGGTTGTATTCTAATGAAGCGGGGTTGGGGAGCTCAGCCATTATTGCTGCAAGCGCTCAAACGCACCACCCGGTGC
GCCAAGCCCTAGTGTCCATGCTCCAAACTTTTATTGTAACTTTAATAGTGTGTTCGGCAACAGCGAGCGTGATTTTAATG
GCGCCAGAATACAACACCTTGCTCCCTAATGGGGAAAAATTAAGCGCTAATTTGCTCACTCTAAAAAGCACGGAGTATTT
TCTAGGCTCATTAGGGACGGTGGTGATTTTTTTGACCATGATCTTTTTTGCTTACTCTACGATTATTGGTTGGGCTTATT
ATGGGGAAAAATGCACTGAATACGCCTTTGGTGAAAAAAAAGTGAAATATTACCGCTTGATCTTTTTAGCGAGTGTGATG
GTGGGGGCTATGGCTAAAATTGATTTTGTGTGGAATTTAGCGGATCTTTCTAACGGGCTTATGGCTATCCCTAATTTGAT
TGCGTTGATTTTGTTGCATAAGGTAGTTTCTTCGGAAACTCGTTGGTATTTTAGCAAGCATTCTAACAAGTAA

Upstream 100 bases:

>100_bases
GACGGATCGAATGAAAAAAATGCCGATATTATGCTTTTTTCTGCATTTTTTAGGGATTAAGGAATTTCTTTTTTAAACCC
TAGTTTATTAAGGAGTTTTT

Downstream 100 bases:

>100_bases
GACGGCATGTTAAAAAGGGCGAGTTTTGTAGAAGTGAATACCGCTTCTTTAAGGCATAATTTTAGCGCAGTCAAAAGCAT
TGTCCCTAAAGACGCCCACA

Product: D-alanine glycine permease

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
METIDSVVRLLSNFVWGIPMQILLVGTGLFLTFYLRGLQFSKIFYAIKILFDKESQSKGDISQFSALMLSLGATVGIGSI
VGVATAISIAGPGAVFWMWVTGLVGMATKYSEGILAVKYREKGAFGYNGGPMYYIKNGLNMPKLAMAFAIFTIIASIGTG
NMTQSNAVSSILSEQANLPSWVSGLLLTLLTAVIVIGGIKSIGKFTSYLAPIMVLLYLIAILFIIFNHFDLAIQAIKLIF
EEAFNPKPVVGGASGALVATMIKTGVARGLYSNEAGLGSSAIIAASAQTHHPVRQALVSMLQTFIVTLIVCSATASVILM
APEYNTLLPNGEKLSANLLTLKSTEYFLGSLGTVVIFLTMIFFAYSTIIGWAYYGEKCTEYAFGEKKVKYYRLIFLASVM
VGAMAKIDFVWNLADLSNGLMAIPNLIALILLHKVVSSETRWYFSKHSNK

Sequences:

>Translated_450_residues
METIDSVVRLLSNFVWGIPMQILLVGTGLFLTFYLRGLQFSKIFYAIKILFDKESQSKGDISQFSALMLSLGATVGIGSI
VGVATAISIAGPGAVFWMWVTGLVGMATKYSEGILAVKYREKGAFGYNGGPMYYIKNGLNMPKLAMAFAIFTIIASIGTG
NMTQSNAVSSILSEQANLPSWVSGLLLTLLTAVIVIGGIKSIGKFTSYLAPIMVLLYLIAILFIIFNHFDLAIQAIKLIF
EEAFNPKPVVGGASGALVATMIKTGVARGLYSNEAGLGSSAIIAASAQTHHPVRQALVSMLQTFIVTLIVCSATASVILM
APEYNTLLPNGEKLSANLLTLKSTEYFLGSLGTVVIFLTMIFFAYSTIIGWAYYGEKCTEYAFGEKKVKYYRLIFLASVM
VGAMAKIDFVWNLADLSNGLMAIPNLIALILLHKVVSSETRWYFSKHSNK
>Mature_450_residues
METIDSVVRLLSNFVWGIPMQILLVGTGLFLTFYLRGLQFSKIFYAIKILFDKESQSKGDISQFSALMLSLGATVGIGSI
VGVATAISIAGPGAVFWMWVTGLVGMATKYSEGILAVKYREKGAFGYNGGPMYYIKNGLNMPKLAMAFAIFTIIASIGTG
NMTQSNAVSSILSEQANLPSWVSGLLLTLLTAVIVIGGIKSIGKFTSYLAPIMVLLYLIAILFIIFNHFDLAIQAIKLIF
EEAFNPKPVVGGASGALVATMIKTGVARGLYSNEAGLGSSAIIAASAQTHHPVRQALVSMLQTFIVTLIVCSATASVILM
APEYNTLLPNGEKLSANLLTLKSTEYFLGSLGTVVIFLTMIFFAYSTIIGWAYYGEKCTEYAFGEKKVKYYRLIFLASVM
VGAMAKIDFVWNLADLSNGLMAIPNLIALILLHKVVSSETRWYFSKHSNK

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=443, Percent_Identity=33.8600451467269, Blast_Score=218, Evalue=6e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 48661; Mature: 48661

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METIDSVVRLLSNFVWGIPMQILLVGTGLFLTFYLRGLQFSKIFYAIKILFDKESQSKGD
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCC
ISQFSALMLSLGATVGIGSIVGVATAISIAGPGAVFWMWVTGLVGMATKYSEGILAVKYR
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
EKGAFGYNGGPMYYIKNGLNMPKLAMAFAIFTIIASIGTGNMTQSNAVSSILSEQANLPS
CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHH
WVSGLLLTLLTAVIVIGGIKSIGKFTSYLAPIMVLLYLIAILFIIFNHFDLAIQAIKLIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEAFNPKPVVGGASGALVATMIKTGVARGLYSNEAGLGSSAIIAASAQTHHPVRQALVSM
HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
LQTFIVTLIVCSATASVILMAPEYNTLLPNGEKLSANLLTLKSTEYFLGSLGTVVIFLTM
HHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHH
IFFAYSTIIGWAYYGEKCTEYAFGEKKVKYYRLIFLASVMVGAMAKIDFVWNLADLSNGL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCH
MAIPNLIALILLHKVVSSETRWYFSKHSNK
HHHHHHHHHHHHHHHHCCCHHEEHHCCCCC
>Mature Secondary Structure
METIDSVVRLLSNFVWGIPMQILLVGTGLFLTFYLRGLQFSKIFYAIKILFDKESQSKGD
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCC
ISQFSALMLSLGATVGIGSIVGVATAISIAGPGAVFWMWVTGLVGMATKYSEGILAVKYR
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
EKGAFGYNGGPMYYIKNGLNMPKLAMAFAIFTIIASIGTGNMTQSNAVSSILSEQANLPS
CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHH
WVSGLLLTLLTAVIVIGGIKSIGKFTSYLAPIMVLLYLIAILFIIFNHFDLAIQAIKLIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEAFNPKPVVGGASGALVATMIKTGVARGLYSNEAGLGSSAIIAASAQTHHPVRQALVSM
HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
LQTFIVTLIVCSATASVILMAPEYNTLLPNGEKLSANLLTLKSTEYFLGSLGTVVIFLTM
HHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHH
IFFAYSTIIGWAYYGEKCTEYAFGEKKVKYYRLIFLASVMVGAMAKIDFVWNLADLSNGL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCH
MAIPNLIALILLHKVVSSETRWYFSKHSNK
HHHHHHHHHHHHHHHHCCCHHEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]