Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188527731

Identifier: 188527731

GI number: 188527731

Start: 938515

End: 940074

Strand: Direct

Name: 188527731

Synonym: HPSH_04770

Alternate gene names: NA

Gene position: 938515-940074 (Clockwise)

Preceding gene: 188527723

Following gene: 188527732

Centisome position: 58.35

GC content: 41.41

Gene sequence:

>1560_bases
ATGCCATCTCCTATTAATCCCATTCACACCAACGCAAGCGCCAACGCAAACGCTTTAAATAGCGGAACGAAAAACGAAGT
TAAAGACACCAAAAACGCCCCCAAAAGCGCATCAAAGGATTTCAGTAAGATCTTAAACCAAAAGATCTCTAAAGACAAAG
CCGCCCCTAAAGAAAATCCTTTAAAAGCCACGCTAAAAGACGCTAAAGAGGACGCTAAAGAGCTTGAAAAAACCCCTACC
CCACACCACCAGCACGCTCAAAATCTCGCCAAAGACCAACAAGCCCCTACTTTAAAAGATTTGCTCAACCACAAAAAAAC
CACCGCCTCGCATGAAGCTCAACACGAAACGCATGAAAACCATGAAACTAACCCAAAAACCCCTAACGAAACTTTAAACA
AGAATGAAAAAAAGCCTAATGGAGTTACTTCTAACGCTCATCAAGCAAGCTTAACCAATAAAAACCCACTAACCCCCACT
AACCACGCTAATAACGCTATCAAAAACCCCACAGCCCCAACTGACACTAAAAAAGATCCAAAAACCCTTAAAGACATCCA
AACGCTCAGCCAAAAACATGACTTAAACGCCAGTAACATTCAAGCAACCGCTCCGTTAGAAAAAAAAGAAACCCCCTTAA
ATGCAAGCGACAAGCTTGCTTTAAAAACAACGCAAACGCCCATTAACCACACCCTTGCAAAGAACGACGCTAAAAACACC
GCCAACCTTTCTAGCGTTTTGCAATCCTTAGAAAAAAAAGAATCGCACCATAAAGAACGCGCAACCCCCCCTAGTAATGA
AAAAAAAACGCCCCCTTTAAGGGAAGCTTTACAAATGAACGCCATTAAAAGGGATAAAACGCTTTCTAAAAAAAAGCCAG
AAAAAACCCCTACTAAAACCCAAACTACAGCCCAAGCCGCAACGCCAGAAAATGCCCCTAAAATCCCTCTTAAAACGCCC
CCTTTAACGCCTTTAATAGGAGCTAACCCCCCTAATGATAACGCTCCAACGCTATTAGAAAAAGAAGAAAAAACTAAAGA
AGTAAGCGAAAATAAAGAAAAAACTAAAGAGTCTAATAACAGCACCCAAAGCGCGCAAAACGCCCAAGCTAGCGATAAGG
CAAGCGAGAATAAAAGCGCTACCCCTAAAGAAACGATCAAGCATTTCACCCAACAATTAAAGCAAGAAATCCAAGAATAC
AAACCCCCCATGAGCAGGATCTCTATGGATTTATTCCCTAAGGAATTGGGCAAGGTTGAAGTGATTATTCAAAAAATGGG
TAAAAACCTTAAAGTGAGCGTGATTTCTCACAACAACAGCCTACAAACCTTTTTAGACAACCAACAAGATCTCAAAAACA
GCCTGAACGCTTTAGGCTTTGAAGGGGTGGATTTGAGCTTTTCGCAAGATTCTTCTAAAGAGCAACCCAAAGAGTCATTA
AGAGAGCCATTCAAAGAGCAGGAATTAACCCCCTTAAAAGAAAACGCCCTAAAAAGCTACCAAGAGAATACGGATAATGA
AAACCAAGAAACGAGCATGCAAATCACTCTTTATGCGTGA

Upstream 100 bases:

>100_bases
GACGCTAGTCAAGCGGTAGCTGATTAAAAAACATAATTAAGGAACTTTTTTTGCTTAACTCCCACCATGTAAAATAAAAG
AGTTGTTTTAAAGGATAATC

Downstream 100 bases:

>100_bases
TTTTAAGCAAGTTTGCTCTATAATAGGACATCTTTAATAAGGAAGAGATCATGGCCATTGATTTAGCAGAAGTTACAGGA
GCTAAAGCCGCACAAGAAAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 519; Mature: 518

Protein sequence:

>519_residues
MPSPINPIHTNASANANALNSGTKNEVKDTKNAPKSASKDFSKILNQKISKDKAAPKENPLKATLKDAKEDAKELEKTPT
PHHQHAQNLAKDQQAPTLKDLLNHKKTTASHEAQHETHENHETNPKTPNETLNKNEKKPNGVTSNAHQASLTNKNPLTPT
NHANNAIKNPTAPTDTKKDPKTLKDIQTLSQKHDLNASNIQATAPLEKKETPLNASDKLALKTTQTPINHTLAKNDAKNT
ANLSSVLQSLEKKESHHKERATPPSNEKKTPPLREALQMNAIKRDKTLSKKKPEKTPTKTQTTAQAATPENAPKIPLKTP
PLTPLIGANPPNDNAPTLLEKEEKTKEVSENKEKTKESNNSTQSAQNAQASDKASENKSATPKETIKHFTQQLKQEIQEY
KPPMSRISMDLFPKELGKVEVIIQKMGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFSQDSSKEQPKESL
REPFKEQELTPLKENALKSYQENTDNENQETSMQITLYA

Sequences:

>Translated_519_residues
MPSPINPIHTNASANANALNSGTKNEVKDTKNAPKSASKDFSKILNQKISKDKAAPKENPLKATLKDAKEDAKELEKTPT
PHHQHAQNLAKDQQAPTLKDLLNHKKTTASHEAQHETHENHETNPKTPNETLNKNEKKPNGVTSNAHQASLTNKNPLTPT
NHANNAIKNPTAPTDTKKDPKTLKDIQTLSQKHDLNASNIQATAPLEKKETPLNASDKLALKTTQTPINHTLAKNDAKNT
ANLSSVLQSLEKKESHHKERATPPSNEKKTPPLREALQMNAIKRDKTLSKKKPEKTPTKTQTTAQAATPENAPKIPLKTP
PLTPLIGANPPNDNAPTLLEKEEKTKEVSENKEKTKESNNSTQSAQNAQASDKASENKSATPKETIKHFTQQLKQEIQEY
KPPMSRISMDLFPKELGKVEVIIQKMGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFSQDSSKEQPKESL
REPFKEQELTPLKENALKSYQENTDNENQETSMQITLYA
>Mature_518_residues
PSPINPIHTNASANANALNSGTKNEVKDTKNAPKSASKDFSKILNQKISKDKAAPKENPLKATLKDAKEDAKELEKTPTP
HHQHAQNLAKDQQAPTLKDLLNHKKTTASHEAQHETHENHETNPKTPNETLNKNEKKPNGVTSNAHQASLTNKNPLTPTN
HANNAIKNPTAPTDTKKDPKTLKDIQTLSQKHDLNASNIQATAPLEKKETPLNASDKLALKTTQTPINHTLAKNDAKNTA
NLSSVLQSLEKKESHHKERATPPSNEKKTPPLREALQMNAIKRDKTLSKKKPEKTPTKTQTTAQAATPENAPKIPLKTPP
LTPLIGANPPNDNAPTLLEKEEKTKEVSENKEKTKESNNSTQSAQNAQASDKASENKSATPKETIKHFTQQLKQEIQEYK
PPMSRISMDLFPKELGKVEVIIQKMGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFSQDSSKEQPKESLR
EPFKEQELTPLKENALKSYQENTDNENQETSMQITLYA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57448; Mature: 57316

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSPINPIHTNASANANALNSGTKNEVKDTKNAPKSASKDFSKILNQKISKDKAAPKENP
CCCCCCCCCCCCCCCCCHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
LKATLKDAKEDAKELEKTPTPHHQHAQNLAKDQQAPTLKDLLNHKKTTASHEAQHETHEN
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
HETNPKTPNETLNKNEKKPNGVTSNAHQASLTNKNPLTPTNHANNAIKNPTAPTDTKKDP
CCCCCCCCCHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
KTLKDIQTLSQKHDLNASNIQATAPLEKKETPLNASDKLALKTTQTPINHTLAKNDAKNT
HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCH
ANLSSVLQSLEKKESHHKERATPPSNEKKTPPLREALQMNAIKRDKTLSKKKPEKTPTKT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
QTTAQAATPENAPKIPLKTPPLTPLIGANPPNDNAPTLLEKEEKTKEVSENKEKTKESNN
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
STQSAQNAQASDKASENKSATPKETIKHFTQQLKQEIQEYKPPMSRISMDLFPKELGKVE
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VIIQKMGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFSQDSSKEQPKESL
HHHHHHCCCEEEEEEECCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
REPFKEQELTPLKENALKSYQENTDNENQETSMQITLYA
HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEC
>Mature Secondary Structure 
PSPINPIHTNASANANALNSGTKNEVKDTKNAPKSASKDFSKILNQKISKDKAAPKENP
CCCCCCCCCCCCCCCCHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
LKATLKDAKEDAKELEKTPTPHHQHAQNLAKDQQAPTLKDLLNHKKTTASHEAQHETHEN
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
HETNPKTPNETLNKNEKKPNGVTSNAHQASLTNKNPLTPTNHANNAIKNPTAPTDTKKDP
CCCCCCCCCHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
KTLKDIQTLSQKHDLNASNIQATAPLEKKETPLNASDKLALKTTQTPINHTLAKNDAKNT
HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCH
ANLSSVLQSLEKKESHHKERATPPSNEKKTPPLREALQMNAIKRDKTLSKKKPEKTPTKT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
QTTAQAATPENAPKIPLKTPPLTPLIGANPPNDNAPTLLEKEEKTKEVSENKEKTKESNN
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
STQSAQNAQASDKASENKSATPKETIKHFTQQLKQEIQEYKPPMSRISMDLFPKELGKVE
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VIIQKMGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFSQDSSKEQPKESL
HHHHHHCCCEEEEEEECCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
REPFKEQELTPLKENALKSYQENTDNENQETSMQITLYA
HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA