| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527707
Identifier: 188527707
GI number: 188527707
Start: 913835
End: 915454
Strand: Reverse
Name: 188527707
Synonym: HPSH_04645
Alternate gene names: NA
Gene position: 915454-913835 (Counterclockwise)
Preceding gene: 188527709
Following gene: 188527706
Centisome position: 56.91
GC content: 38.21
Gene sequence:
>1620_bases TTGCCTAAAGGCATGAGCGTTGAAGAATTTAAGCAAACTTTAGAGAGCGTGGAAAACAAAGAAAGGTTTTTAGATCATTT AAAAACAAGAGAAAACAGCGATGAAAGGTTAAAAGCGCTTAATTTAGTAGAACCAACTCTTAGAGAGCCTCACATTGAAA TTTTCACTAAAGATAAAAATAACGCTACAGACAAAAAAGAATACATCAAAGCGTTTAAAGATGAAAGCCAAGCACGCGTA TATATGCTAATCACACAAGATAACGATACGATTTTAAGGACTTTTATACCAGATATACCGGAAAGATATGTAAGAAATCA TGTAAGAGATGCTGACATTATCCACTCTTTCATTCAGCCGAACAGAACCGCAAAGAGCGACGACTTACAAGCCGTAGTGG TCTATGGAGAGAATACTACTAAAAAACCTCTAACAAGTCAAGAGGATTTACTTAAAACACAAGAAAACACGCTAAAAACG CAAGATTTAAGCCCCCTTGAACTTGCCAAAGCCGAAAAGCTTGCCAAATTAGAAAGCGATAAGCTAGAAAGTGAAAAAGA GTTTAAAAGGCTCAAAGAACAAGAGCAAGCGCGCAAAGCCGCTTTAAAAAAGAAATTAGAATACGAGCGAGGCAATGCAG GCAATATTGAAAGCCAGACTAAAATAGAAGTAGGAGAAGATATACCCGCACGCGCACAAGCTCAAATCCCTAAAAGCCGA GTGAGGTTGAATGAAAGAGAGATTTACGATCTCAATTATGCGATCGTGAAAGCTAAAGACCTAAAACCAAGCTTTACCAC AGGCGGGACGCAAAAGCGCACCAACATGAACGAAGAACAGATCAAAAGCATTTCTGAAAACTTTGACCCTAAGAAGATAT TCGGGAGCGGAGGTTTTGAAGATTTACCGATCATTTTACACGACGGGCAAGTGATCGCAGGAAACCACAGAATCCAAGGC ATGCTCAATTTCACGCCTAAAAGCCGTTTTGCTTACGAGAAAGCGATCAAGGAATACTATCATATAGATTTAAAGCCGGA CGAGTTGTTAGTGCGCTTGCCTTCTAAACGCTTAAATAATACCGAGATCAACAATTTAGCGGCTTCTAGCAATCAAGGAC GCTTCAATAGCGAGAGCGATCATGCGATAGCGGTTTTGAGCCACTATGAAAGCAAATTAAAAGAATTAGAAACGAAGTTA AACGCTGATAGCGTTTATTCTTTAAAAAACATGGTTGCTAAAAACCTTAATTTTGATAAAGCCGCTCACCCTAATGTAAC CGATAGCAACCTAGCGCTTTTAATGTATAACATGCCAAGGACTAAAACGCAAGGCATAGAGCTATTAAACCGCTGGCAGA AAGAATTTTCTAACGACACTAAAAGTTATGAAAAAGTTAAAAAAATGTTTATAGATAACGCCGGCAGTTTTCATAACTTA ATTCACGACATGAGCTTTCCTAATATAAGCCTGAACGCTTATTTGAGCGACATAATGGATCGCGCTTTTGCGAACTTGAA GAATTATCAAAGCACCAGCGAAAGCCTAAAAGATTTGAGCGAGAAATTCTATAAAACGCATTCTTTAGGGAATGTAATTA TTTATAGAACTCTTATCTAA
Upstream 100 bases:
>100_bases AAGCATAAGAGAGCAAGACACGCGCCCTTTTGAGGTCATAAAAGACAAAGAAGCGTTTTTTAAAGACTTAAACCAAAATC TAAACGATAACGCCATTGCC
Downstream 100 bases:
>100_bases GCTTCTTTTAAAAGGAAGTTTATGAAGTTTTTTAAAATCCCTAAACTGCACTTAAATTCTAGAGAGTGCCAAGAAATGTT TTTAGACAATGTTAAATTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 539; Mature: 538
Protein sequence:
>539_residues MPKGMSVEEFKQTLESVENKERFLDHLKTRENSDERLKALNLVEPTLREPHIEIFTKDKNNATDKKEYIKAFKDESQARV YMLITQDNDTILRTFIPDIPERYVRNHVRDADIIHSFIQPNRTAKSDDLQAVVVYGENTTKKPLTSQEDLLKTQENTLKT QDLSPLELAKAEKLAKLESDKLESEKEFKRLKEQEQARKAALKKKLEYERGNAGNIESQTKIEVGEDIPARAQAQIPKSR VRLNEREIYDLNYAIVKAKDLKPSFTTGGTQKRTNMNEEQIKSISENFDPKKIFGSGGFEDLPIILHDGQVIAGNHRIQG MLNFTPKSRFAYEKAIKEYYHIDLKPDELLVRLPSKRLNNTEINNLAASSNQGRFNSESDHAIAVLSHYESKLKELETKL NADSVYSLKNMVAKNLNFDKAAHPNVTDSNLALLMYNMPRTKTQGIELLNRWQKEFSNDTKSYEKVKKMFIDNAGSFHNL IHDMSFPNISLNAYLSDIMDRAFANLKNYQSTSESLKDLSEKFYKTHSLGNVIIYRTLI
Sequences:
>Translated_539_residues MPKGMSVEEFKQTLESVENKERFLDHLKTRENSDERLKALNLVEPTLREPHIEIFTKDKNNATDKKEYIKAFKDESQARV YMLITQDNDTILRTFIPDIPERYVRNHVRDADIIHSFIQPNRTAKSDDLQAVVVYGENTTKKPLTSQEDLLKTQENTLKT QDLSPLELAKAEKLAKLESDKLESEKEFKRLKEQEQARKAALKKKLEYERGNAGNIESQTKIEVGEDIPARAQAQIPKSR VRLNEREIYDLNYAIVKAKDLKPSFTTGGTQKRTNMNEEQIKSISENFDPKKIFGSGGFEDLPIILHDGQVIAGNHRIQG MLNFTPKSRFAYEKAIKEYYHIDLKPDELLVRLPSKRLNNTEINNLAASSNQGRFNSESDHAIAVLSHYESKLKELETKL NADSVYSLKNMVAKNLNFDKAAHPNVTDSNLALLMYNMPRTKTQGIELLNRWQKEFSNDTKSYEKVKKMFIDNAGSFHNL IHDMSFPNISLNAYLSDIMDRAFANLKNYQSTSESLKDLSEKFYKTHSLGNVIIYRTLI >Mature_538_residues PKGMSVEEFKQTLESVENKERFLDHLKTRENSDERLKALNLVEPTLREPHIEIFTKDKNNATDKKEYIKAFKDESQARVY MLITQDNDTILRTFIPDIPERYVRNHVRDADIIHSFIQPNRTAKSDDLQAVVVYGENTTKKPLTSQEDLLKTQENTLKTQ DLSPLELAKAEKLAKLESDKLESEKEFKRLKEQEQARKAALKKKLEYERGNAGNIESQTKIEVGEDIPARAQAQIPKSRV RLNEREIYDLNYAIVKAKDLKPSFTTGGTQKRTNMNEEQIKSISENFDPKKIFGSGGFEDLPIILHDGQVIAGNHRIQGM LNFTPKSRFAYEKAIKEYYHIDLKPDELLVRLPSKRLNNTEINNLAASSNQGRFNSESDHAIAVLSHYESKLKELETKLN ADSVYSLKNMVAKNLNFDKAAHPNVTDSNLALLMYNMPRTKTQGIELLNRWQKEFSNDTKSYEKVKKMFIDNAGSFHNLI HDMSFPNISLNAYLSDIMDRAFANLKNYQSTSESLKDLSEKFYKTHSLGNVIIYRTLI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62045; Mature: 61914
Theoretical pI: Translated: 9.02; Mature: 9.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKGMSVEEFKQTLESVENKERFLDHLKTRENSDERLKALNLVEPTLREPHIEIFTKDKN CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHCCCCEEEEECCCC NATDKKEYIKAFKDESQARVYMLITQDNDTILRTFIPDIPERYVRNHVRDADIIHSFIQP CCCHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHCCCHHHHHHHHHCCHHHHHHHHHCC NRTAKSDDLQAVVVYGENTTKKPLTSQEDLLKTQENTLKTQDLSPLELAKAEKLAKLESD CCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH KLESEKEFKRLKEQEQARKAALKKKLEYERGNAGNIESQTKIEVGEDIPARAQAQIPKSR HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHH VRLNEREIYDLNYAIVKAKDLKPSFTTGGTQKRTNMNEEQIKSISENFDPKKIFGSGGFE HCCCCCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHEECCCCCC DLPIILHDGQVIAGNHRIQGMLNFTPKSRFAYEKAIKEYYHIDLKPDELLVRLPSKRLNN CCCEEEECCEEEECCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHCCC TEINNLAASSNQGRFNSESDHAIAVLSHYESKLKELETKLNADSVYSLKNMVAKNLNFDK CHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC AAHPNVTDSNLALLMYNMPRTKTQGIELLNRWQKEFSNDTKSYEKVKKMFIDNAGSFHNL CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHH IHDMSFPNISLNAYLSDIMDRAFANLKNYQSTSESLKDLSEKFYKTHSLGNVIIYRTLI HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC >Mature Secondary Structure PKGMSVEEFKQTLESVENKERFLDHLKTRENSDERLKALNLVEPTLREPHIEIFTKDKN CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHCCCCEEEEECCCC NATDKKEYIKAFKDESQARVYMLITQDNDTILRTFIPDIPERYVRNHVRDADIIHSFIQP CCCHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHCCCHHHHHHHHHCCHHHHHHHHHCC NRTAKSDDLQAVVVYGENTTKKPLTSQEDLLKTQENTLKTQDLSPLELAKAEKLAKLESD CCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH KLESEKEFKRLKEQEQARKAALKKKLEYERGNAGNIESQTKIEVGEDIPARAQAQIPKSR HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHH VRLNEREIYDLNYAIVKAKDLKPSFTTGGTQKRTNMNEEQIKSISENFDPKKIFGSGGFE HCCCCCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHEECCCCCC DLPIILHDGQVIAGNHRIQGMLNFTPKSRFAYEKAIKEYYHIDLKPDELLVRLPSKRLNN CCCEEEECCEEEECCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHCCC TEINNLAASSNQGRFNSESDHAIAVLSHYESKLKELETKLNADSVYSLKNMVAKNLNFDK CHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC AAHPNVTDSNLALLMYNMPRTKTQGIELLNRWQKEFSNDTKSYEKVKKMFIDNAGSFHNL CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHH IHDMSFPNISLNAYLSDIMDRAFANLKNYQSTSESLKDLSEKFYKTHSLGNVIIYRTLI HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA