Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188527705

Identifier: 188527705

GI number: 188527705

Start: 911758

End: 913038

Strand: Reverse

Name: 188527705

Synonym: HPSH_04635

Alternate gene names: NA

Gene position: 913038-911758 (Counterclockwise)

Preceding gene: 188527706

Following gene: 188527704

Centisome position: 56.76

GC content: 29.74

Gene sequence:

>1281_bases
ATGGCTTATGTAAAGAACGCTATACACTTACCACTAGATAGCCTTTTAGAAAGAAATGGTTATAGATTGAACGCACAAAA
AAGCACTAAAATTTGGAAAGTTTATAGTAATAGTAATGAAAAGCTTCTTGTAAGGCAAAATGCTAATTTTCAATGGTTTT
ATTTAAACTGCGACAATAAAGCTGATAGCGGTAATATTATCAATTTCTGTAAGAACAGAAATTTAGATTTAATGGGTTTT
ACGCAAGGTTTAATCATAAACGATGACACCATGAAAGAAAATGCCTCTAAACTAACTAGTAAAGAAGCAGATAAATTTAA
AGAGCAACAAAAAATTATTGATAAATTCAATCAATTTGAACTTTATGATTTAACCAATTCCAAAATGTTAGAAAAAAGAA
AGCTTAATGGTAATCTGTTTTTAGCCTATAGCCACTCTTTAAAAAGAGATAAACATAATAACATGTGTGTGCCTAACTTC
TTATATTCCAAAAATAGCCATTCTAATAAGATCGTTTCTTACACTAGACGCCTGGAAAATCCTATGACTAGCTTAAATAA
TCAAGTGTTAAACAGACCTATCAATGCTTTAAATAAGGGGGAAAAAGGTATAGAAATGCTTGCCCCTAAGGATTTAAAGC
TGATTAAAAATATTGTTTTAAGTGAAAGCATTATTGATAGCATGAGTTATTTGCAATTAAGAAAGCTCAATGCTTATGAA
AGTATTCTATTAAGCTGTAATGGGCAATTTAATGCTAATAAATTAGACGCTTTTTTAGAAAAATTATTGAGCGATATTGA
GCAATCTAAAAGCAAAGAATACGCTGACTATCTTAAAAAGGTTCAGAGCTTTGAATTATATAAAGGCACTCAAACAAGAA
TTGAAAATAAAACAAACACCACTAGAGATAATTTAACTATCCATTTTTCAAGGGCTAAATATCCTAGTAGCACAGATTTT
ATGCCAGCTAAAGATTGGGTTAATGAAAGTGTAAAAAGTTTAGATGAATTAGTTAGGGTGATTACAAACTACCATTATTC
AAGCGCGATTTATAAGAATAACTATAGAAATACCCATAACACCAAAGGCTTTTCTAACTTGCTTATTTTTGATATAGATA
ATGACAAAGATAAGCCTAATATTAGCCTAGAAGATACTAAAAATCTCTTTAAAAAACATGGCATAGAAACGCTTATTATC
CCATCAAGAAACCATAATAAAAAAAGCACGGACACATTGCTGAAAGATTTAGAATCATTATCCCTACACAGCAAACTATA
G

Upstream 100 bases:

>100_bases
CCTTATCAAAAAGCTATTGTATTGAAAAATTTGCAAAGAGCTTTTCATAGATTGAGCGTTAAATCTAAAGATTTAAGAGG
GTGCGCATAAAGGCTTGATT

Downstream 100 bases:

>100_bases
GTCAAGATTTTAATTGTAACAATGATTTTAGTGCCTTTAACAATTTTTGTGCTAAGGCTTTGGGTATTTATGACTACATA
GATAAAAAAGTTTCTGTGGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MAYVKNAIHLPLDSLLERNGYRLNAQKSTKIWKVYSNSNEKLLVRQNANFQWFYLNCDNKADSGNIINFCKNRNLDLMGF
TQGLIINDDTMKENASKLTSKEADKFKEQQKIIDKFNQFELYDLTNSKMLEKRKLNGNLFLAYSHSLKRDKHNNMCVPNF
LYSKNSHSNKIVSYTRRLENPMTSLNNQVLNRPINALNKGEKGIEMLAPKDLKLIKNIVLSESIIDSMSYLQLRKLNAYE
SILLSCNGQFNANKLDAFLEKLLSDIEQSKSKEYADYLKKVQSFELYKGTQTRIENKTNTTRDNLTIHFSRAKYPSSTDF
MPAKDWVNESVKSLDELVRVITNYHYSSAIYKNNYRNTHNTKGFSNLLIFDIDNDKDKPNISLEDTKNLFKKHGIETLII
PSRNHNKKSTDTLLKDLESLSLHSKL

Sequences:

>Translated_426_residues
MAYVKNAIHLPLDSLLERNGYRLNAQKSTKIWKVYSNSNEKLLVRQNANFQWFYLNCDNKADSGNIINFCKNRNLDLMGF
TQGLIINDDTMKENASKLTSKEADKFKEQQKIIDKFNQFELYDLTNSKMLEKRKLNGNLFLAYSHSLKRDKHNNMCVPNF
LYSKNSHSNKIVSYTRRLENPMTSLNNQVLNRPINALNKGEKGIEMLAPKDLKLIKNIVLSESIIDSMSYLQLRKLNAYE
SILLSCNGQFNANKLDAFLEKLLSDIEQSKSKEYADYLKKVQSFELYKGTQTRIENKTNTTRDNLTIHFSRAKYPSSTDF
MPAKDWVNESVKSLDELVRVITNYHYSSAIYKNNYRNTHNTKGFSNLLIFDIDNDKDKPNISLEDTKNLFKKHGIETLII
PSRNHNKKSTDTLLKDLESLSLHSKL
>Mature_425_residues
AYVKNAIHLPLDSLLERNGYRLNAQKSTKIWKVYSNSNEKLLVRQNANFQWFYLNCDNKADSGNIINFCKNRNLDLMGFT
QGLIINDDTMKENASKLTSKEADKFKEQQKIIDKFNQFELYDLTNSKMLEKRKLNGNLFLAYSHSLKRDKHNNMCVPNFL
YSKNSHSNKIVSYTRRLENPMTSLNNQVLNRPINALNKGEKGIEMLAPKDLKLIKNIVLSESIIDSMSYLQLRKLNAYES
ILLSCNGQFNANKLDAFLEKLLSDIEQSKSKEYADYLKKVQSFELYKGTQTRIENKTNTTRDNLTIHFSRAKYPSSTDFM
PAKDWVNESVKSLDELVRVITNYHYSSAIYKNNYRNTHNTKGFSNLLIFDIDNDKDKPNISLEDTKNLFKKHGIETLIIP
SRNHNKKSTDTLLKDLESLSLHSKL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49436; Mature: 49305

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYVKNAIHLPLDSLLERNGYRLNAQKSTKIWKVYSNSNEKLLVRQNANFQWFYLNCDNK
CCCCCCHHCCCHHHHHHCCCCEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEEECCCC
ADSGNIINFCKNRNLDLMGFTQGLIINDDTMKENASKLTSKEADKFKEQQKIIDKFNQFE
CCCCCHHHHHCCCCCEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
LYDLTNSKMLEKRKLNGNLFLAYSHSLKRDKHNNMCVPNFLYSKNSHSNKIVSYTRRLEN
EEECCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHCC
PMTSLNNQVLNRPINALNKGEKGIEMLAPKDLKLIKNIVLSESIIDSMSYLQLRKLNAYE
HHHHHHHHHHHCCHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
SILLSCNGQFNANKLDAFLEKLLSDIEQSKSKEYADYLKKVQSFELYKGTQTRIENKTNT
HEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC
TRDNLTIHFSRAKYPSSTDFMPAKDWVNESVKSLDELVRVITNYHYSSAIYKNNYRNTHN
CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHEECCCCCCCC
TKGFSNLLIFDIDNDKDKPNISLEDTKNLFKKHGIETLIIPSRNHNKKSTDTLLKDLESL
CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH
SLHSKL
HHHCCC
>Mature Secondary Structure 
AYVKNAIHLPLDSLLERNGYRLNAQKSTKIWKVYSNSNEKLLVRQNANFQWFYLNCDNK
CCCCCHHCCCHHHHHHCCCCEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEEECCCC
ADSGNIINFCKNRNLDLMGFTQGLIINDDTMKENASKLTSKEADKFKEQQKIIDKFNQFE
CCCCCHHHHHCCCCCEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
LYDLTNSKMLEKRKLNGNLFLAYSHSLKRDKHNNMCVPNFLYSKNSHSNKIVSYTRRLEN
EEECCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHCC
PMTSLNNQVLNRPINALNKGEKGIEMLAPKDLKLIKNIVLSESIIDSMSYLQLRKLNAYE
HHHHHHHHHHHCCHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
SILLSCNGQFNANKLDAFLEKLLSDIEQSKSKEYADYLKKVQSFELYKGTQTRIENKTNT
HEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC
TRDNLTIHFSRAKYPSSTDFMPAKDWVNESVKSLDELVRVITNYHYSSAIYKNNYRNTHN
CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHEECCCCCCCC
TKGFSNLLIFDIDNDKDKPNISLEDTKNLFKKHGIETLIIPSRNHNKKSTDTLLKDLESL
CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH
SLHSKL
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA