Click here to switch to the map view.

The map label for this gene is ybgC [C]

Identifier: 188527665

GI number: 188527665

Start: 868394

End: 868795

Strand: Direct

Name: ybgC [C]

Synonym: HPSH_04435

Alternate gene names: 188527665

Gene position: 868394-868795 (Clockwise)

Preceding gene: 188527658

Following gene: 188527666

Centisome position: 53.99

GC content: 38.06

Gene sequence:

>402_bases
ATGCGCTGTAGGGTATATTACGAAGATACCGACTCTGAAGGCGTGGTCTATCATGCGAATTATTTGAAATATTGCGAAAG
GGCTAGGAGCGAGTTTTTTTTTAAACAAAATGTCTTGCCAGAAAATGAAGAAGGCGTGTTTGTTATCCGCTCTATCAAAG
CGGATTTTTTCACCCCCGCAAGCCTTGGGCAGGTCTTAGAAATAAGAACGCAAATTAAAGAATTAAGAAGGTTTTTTGTG
GTGCTTTTTCAAGAAATTTATTGTATCCAAAACACTTCTTTAGAGCCTATGAAGCCTTTTAAAGTCTTTGCTTCAGAAAT
CAAGTTTGGCTTTGTCAATCGCTCTACATACAGACCTATTGCCATTCCTAAGTTGTTTAAGGAGCTTCTTAATGCCATCT
AA

Upstream 100 bases:

>100_bases
ATACCTAAAAAATATAAAGCAACGCCCCTAGATTATACTATAGTTAAGTTACATATTGTATAATTTTAAGAGAGTTTCAT
TATTTAAGTAAGGGGAATCA

Downstream 100 bases:

>100_bases
TTTAGAAAAACCCACCATTATTTACCCTTGCCTTTGGGATTATAGGGTGATTATGACCACTAAAGATACAAGCGCGCTAA
AAGAGCTTTTAGAAACCTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPASLGQVLEIRTQIKELRRFFV
VLFQEIYCIQNTSLEPMKPFKVFASEIKFGFVNRSTYRPIAIPKLFKELLNAI

Sequences:

>Translated_133_residues
MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPASLGQVLEIRTQIKELRRFFV
VLFQEIYCIQNTSLEPMKPFKVFASEIKFGFVNRSTYRPIAIPKLFKELLNAI
>Mature_133_residues
MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPASLGQVLEIRTQIKELRRFFV
VLFQEIYCIQNTSLEPMKPFKVFASEIKFGFVNRSTYRPIAIPKLFKELLNAI

Specific function: Unknown

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=126, Percent_Identity=38.0952380952381, Blast_Score=80, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 15771; Mature: 15771

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS01328 4HBCOA_THIOESTERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPA
CCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCH
SLGQVLEIRTQIKELRRFFVVLFQEIYCIQNTSLEPMKPFKVFASEIKFGFVNRSTYRPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
AIPKLFKELLNAI
HHHHHHHHHHHCC
>Mature Secondary Structure
MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPA
CCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCH
SLGQVLEIRTQIKELRRFFVVLFQEIYCIQNTSLEPMKPFKVFASEIKFGFVNRSTYRPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
AIPKLFKELLNAI
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]