| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
Click here to switch to the map view.
The map label for this gene is gyrB
Identifier: 188527660
GI number: 188527660
Start: 860900
End: 863221
Strand: Reverse
Name: gyrB
Synonym: HPSH_04410
Alternate gene names: 188527660
Gene position: 863221-860900 (Counterclockwise)
Preceding gene: 188527661
Following gene: 188527659
Centisome position: 53.66
GC content: 40.53
Gene sequence:
>2322_bases ATGCAAAATTACCAGAGCCATAGTATCAAGGTTTTAAAAGGCTTAGAGGGGGTTAGGAAACGCCCTGGAATGTATATTGG CGATACCAATGTGGGTGGGTTGCACCACATGGTGTATGAAGTCGTGGATAACGCTGTAGATGAGAGCATGGCGGGTTTTT GCGATACGATTAATATCACTTTGACTGATGAGGGTTCATGCATTGTAGAAGATAACGGGCGAGGCATTCCTGTAGATATT CACCCCACGGAAAAAATCCCCGCTTGCACCGTGGTTTTAACGATTTTGCATGCGGGAGGCAAGTTTGATAATGATACTTA TAAAGTTTCAGGCGGTTTGCATGGCGTGGGCGTTTCGGTTGTGAACGCTTTAAGCAAACGCTTGATTATGACCATTAAAA AAGAGGGTCAAATCTATCGCCAGGAGTTTGAAAAGGGTATCCCCATTAGCGAGCTTGAAATCATTGGCAAAACCAAAAGC GCTAAAGAAAGCGGCACAACTATTGAATTTTTCCCTGATGAGAGCGTGATGGAAGTCGTTGAATTTCAAGCGGATATTTT ACAAAAACGCTTCAAAGAAATGGCGTATCTTAACGACGGCTTAAAAATTTCTTTCAAAGAAGAAAAAACCCAGTTGCAAG AGACTTATTTCTATGAAGACGGCTTGAAACAATTCGTTAAAGACAGCGCTAAAAAGGAATTGCTCACCCCCATTATTTCG TTTAAAAGCATGGATGAAGAAACGCGCACTTCTATAGAAGTCGCTCTAGCGTATGCTGATGATTACAATGAAAACACTTT AAGCTTTGTGAATAACATTAAAACTTCTGAGGGCGGCACGCATGAAGCGGGCTTTAAAATGGGCTTGTCTAAGGCGATTT TACAATATATTGATGGAAACATTAAGACAAGAGAATCCCGCCCCATCTCTGAAGACATTAAAGAGGGCTTGATTGCGGTC GTGAGCTTGAAAATGAGCGAGCCTTTATTTGAAGGGCAGACTAAATCCAAACTCGGTAGTTCGTATGCGCGCGCGTTGGT TTCAAAATTAGTCTATGATAAAATCCATCAATTTTTAGAAGAAAACCCTAACGAAGCCAAAATCATTGCCAATAAAGCCC TTTTAGCCGCAAAAGCCAGAGAAGCCAGTAAGAAAGCCAGAGAGCTTACAAGGAAAAAAGATAATTTGAGTGTCGGCACT TTGCCTGGAAAATTAGCCGATTGCCAGAGTAAAGATCCTTTAGAGAGTGAAATTTTTTTAGTGGAGGGCGATAGTGCAGG CGGTAGCGCTAAACAAGGGCGCGATAGGGTTTTCCAAGCGATCTTGCCTTTAAAAGGTAAGATTTTAAATGTGGAAAAAA GCCATTTGTCAAAAATCCTAAAATCAGAAGAGATTAAAAACATGATCACGGCTTTTGGGTGTGGCATTCAAGAGAGTTTT GATATAGAAAGATTGCGCTATCATAAAATCATTATCATGACCGATGCTGATGTGGATGGGAGCCATATCCAAACCTTGCT GATGACTTTTTTCTATCGTTATTTGCGCCCGCTGATTGAACAAGGGCATGTTTATATCGCTCAAGCCCCTCTTTACAAAT ACAAGAAAGGCAAGACAGAAATCTATCTTAAAGACAGCGTGGCTTTGGATCATTTCTTAATTGAGCATGGCATCAATTCG GTGGATATTGAAGGGATTGGCAAGAACGATTTGATGAATTTGTTAAAAGTGGCGCGCCATTACCGCTACGCGCTTTTGGA ATTAGAAAAACGCTACAATTTGCTAGAAATTTTACGCTTTTTGATTGAAACTAAGGACGCCTTAAGCTTTGATATGAAAA TTTTAGAAAAAAGCATTTTGGAAAAATTAGAGGGCTTGAATTATCAGATCTTACGCTCTTTTGCTACTGAAGAGAGCTTG CATTTGCACGCGCAAACCCCTAAAGGCTTGGTGGAATTTAACCTAGATGACAACCTCTTTAAAGAGGTGTTGTTTGAAGA AGCGAATTACACTTACCAAAAGCTTATGGAGTATAATTTAGACTTCTTAGAAAATAAGGATATTTTGGCGTTTTTAGAAG AAGTGGAAAATCATGCTAAAAAGGGAGCGAATATCCAGCGCTATAAGGGGCTAGGCGAGATGAACCCCAATGATTTGTGG GAAACGACCATGCATAAAGAAAACCGCAGCTTAATCAAACTCAAAATTGAAGATTTAGAAAAAACCGATGCAGTCTTTTC GCTTTGCATGGGCGATGAGGTAGAGCCTAGAAGAGCCTTTATCCAAGCGCATGCTAAAGATGTGAAGCAGCTAGATGTGT AA
Upstream 100 bases:
>100_bases CGCCTTTTTTGATCCAAGAGTCTCTTGATGAAAAGCAAAGCCATTTGAACGCTAAAATTTCCACTTTGATGATGCCAATC ACACTATAAAGGCTGATTGA
Downstream 100 bases:
>100_bases GGGATTTTGATTAGAACCCCTAAACATTTAAATAAGCGAGAGAGCGTGAATTTAGGGGCTTATTACACGCCTTGTTATTG AGCGTGGGGAAACGCTAGGC
Product: DNA gyrase subunit B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 773; Mature: 773
Protein sequence:
>773_residues MQNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITLTDEGSCIVEDNGRGIPVDI HPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKS AKESGTTIEFFPDESVMEVVEFQADILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYEDGLKQFVKDSAKKELLTPIIS FKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIDGNIKTRESRPISEDIKEGLIAV VSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGT LPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGIQESF DIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYKKGKTEIYLKDSVALDHFLIEHGINS VDIEGIGKNDLMNLLKVARHYRYALLELEKRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRSFATEESL HLHAQTPKGLVEFNLDDNLFKEVLFEEANYTYQKLMEYNLDFLENKDILAFLEEVENHAKKGANIQRYKGLGEMNPNDLW ETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEVEPRRAFIQAHAKDVKQLDV
Sequences:
>Translated_773_residues MQNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITLTDEGSCIVEDNGRGIPVDI HPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKS AKESGTTIEFFPDESVMEVVEFQADILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYEDGLKQFVKDSAKKELLTPIIS FKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIDGNIKTRESRPISEDIKEGLIAV VSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGT LPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGIQESF DIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYKKGKTEIYLKDSVALDHFLIEHGINS VDIEGIGKNDLMNLLKVARHYRYALLELEKRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRSFATEESL HLHAQTPKGLVEFNLDDNLFKEVLFEEANYTYQKLMEYNLDFLENKDILAFLEEVENHAKKGANIQRYKGLGEMNPNDLW ETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEVEPRRAFIQAHAKDVKQLDV >Mature_773_residues MQNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITLTDEGSCIVEDNGRGIPVDI HPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKS AKESGTTIEFFPDESVMEVVEFQADILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYEDGLKQFVKDSAKKELLTPIIS FKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIDGNIKTRESRPISEDIKEGLIAV VSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGT LPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGIQESF DIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYKKGKTEIYLKDSVALDHFLIEHGINS VDIEGIGKNDLMNLLKVARHYRYALLELEKRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRSFATEESL HLHAQTPKGLVEFNLDDNLFKEVLFEEANYTYQKLMEYNLDFLENKDILAFLEEVENHAKKGANIQRYKGLGEMNPNDLW ETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEVEPRRAFIQAHAKDVKQLDV
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0187
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Homo sapiens, GI19913408, Length=576, Percent_Identity=27.0833333333333, Blast_Score=147, Evalue=3e-35, Organism=Homo sapiens, GI19913406, Length=583, Percent_Identity=25.3859348198971, Blast_Score=130, Evalue=4e-30, Organism=Escherichia coli, GI48994957, Length=816, Percent_Identity=43.75, Blast_Score=627, Evalue=0.0, Organism=Escherichia coli, GI1789408, Length=544, Percent_Identity=42.0955882352941, Blast_Score=418, Evalue=1e-118, Organism=Caenorhabditis elegans, GI212645845, Length=501, Percent_Identity=27.5449101796407, Blast_Score=139, Evalue=8e-33, Organism=Caenorhabditis elegans, GI17535065, Length=560, Percent_Identity=26.7857142857143, Blast_Score=134, Evalue=2e-31, Organism=Caenorhabditis elegans, GI212645657, Length=144, Percent_Identity=31.25, Blast_Score=73, Evalue=7e-13, Organism=Saccharomyces cerevisiae, GI6324241, Length=568, Percent_Identity=28.169014084507, Blast_Score=127, Evalue=6e-30, Organism=Drosophila melanogaster, GI17136538, Length=504, Percent_Identity=26.7857142857143, Blast_Score=124, Evalue=4e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011557 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR001241 - InterPro: IPR013759 - InterPro: IPR002288 - InterPro: IPR013506 - InterPro: IPR013760 - InterPro: IPR018522 - InterPro: IPR006171 [H]
Pfam domain/function: PF00204 DNA_gyraseB; PF00986 DNA_gyraseB_C; PF02518 HATPase_c; PF01751 Toprim [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 87486; Mature: 87486
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: PS00177 TOPOISOMERASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINIT CCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV EECCCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHH VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV HHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHEECCCCCCCCCCCEEEECCCHHHHHHH EFQADILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYEDGLKQFVKDSAKKELLTPIIS HHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIDGN HHCCCHHHHHEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIHQFLE CCCCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLESEIFL CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCEEEE VEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGIQESF EECCCCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCC DIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYKKGKTE CHHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCEE IYLKDSVALDHFLIEHGINSVDIEGIGKNDLMNLLKVARHYRYALLELEKRYNLLEILRF EEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH LIETKDALSFDMKILEKSILEKLEGLNYQILRSFATEESLHLHAQTPKGLVEFNLDDNLF HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCCCCEEECCCHHHH KEVLFEEANYTYQKLMEYNLDFLENKDILAFLEEVENHAKKGANIQRYKGLGEMNPNDLW HHHHHHHCCHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHH ETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEVEPRRAFIQAHAKDVKQLDV HHHHHCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MQNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINIT CCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV EECCCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHH VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV HHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHEECCCCCCCCCCCEEEECCCHHHHHHH EFQADILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYEDGLKQFVKDSAKKELLTPIIS HHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIDGN HHCCCHHHHHEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIHQFLE CCCCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLESEIFL CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCEEEE VEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGIQESF EECCCCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCC DIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYKKGKTE CHHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCEE IYLKDSVALDHFLIEHGINSVDIEGIGKNDLMNLLKVARHYRYALLELEKRYNLLEILRF EEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH LIETKDALSFDMKILEKSILEKLEGLNYQILRSFATEESLHLHAQTPKGLVEFNLDDNLF HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCCCCEEECCCHHHH KEVLFEEANYTYQKLMEYNLDFLENKDILAFLEEVENHAKKGANIQRYKGLGEMNPNDLW HHHHHHHCCHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHH ETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEVEPRRAFIQAHAKDVKQLDV HHHHHCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]