| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527650
Identifier: 188527650
GI number: 188527650
Start: 850275
End: 852344
Strand: Reverse
Name: 188527650
Synonym: HPSH_04360
Alternate gene names: NA
Gene position: 852344-850275 (Counterclockwise)
Preceding gene: 188527652
Following gene: 188527649
Centisome position: 52.99
GC content: 34.78
Gene sequence:
>2070_bases ATGGAAGCAAAAGCTATGAAACTGCTAGACTTTATTGGTAAGAGTCAAGAAAGACAATTGGTTATTCCCATCTATCAGAG GGTGTATAGTTGGGGAAATGAACAATGCAAGCAGTTATGGGATGATATTATCAAAACGGGTGGAAACGATCAAATAAAAG GGCATTTTATCGGTTCTATTTTGTATGTGCATGATGGCATATACAAAATTGGCCACAACAAGCTTCTCATCATTGACGGC CAACAAAGGCTCACTACTATCACGCTTTTACTCACCGCTTTAAGAAATCATTGGAGCGATAAGCGTAAAGAAATAGAGGA CCACTATCTTATCAACAGCGATAAGGACGGCGATGAGAAATTCAGACTCATCCTCTCAGACTCTGATAAAGATACCTTGC TATCTTTGATTGATAAAGACAGAAGAAAACCGATCAAGCCTTCATCAAAAATAATGGAAAATTTTAAATTATTTGAAGAA TGGATCAGTAAAAACACCAACAAACTAGAAACGATTTTTAAAGGATTAGAAAAGCTTATGGTAGTTTATATTGCTTTAGA AAAAGGAAAAGGTAATCCTCAACTTATCTTTGAGAGCATGAACTCAACGGGCAAGGATCTCACGGAAACGGATTTGATCA GAAACTATATCGTGATGGAAACAGAGATTGAAAAGCAAGAATACTTTTATAATAAATACTGGAGGGATATGGAGGAGGAA TTTGAACAGAGTGAGAGAGAGGATTTATTTAATAAATTTGTCCGGCATTACCTCACGATCAAAACAAGAGAAATCCCTAA TATCAAGAAGGTTTATGCAGCTTTCAAGGATTACCGGCAAAAAGAGGGGATAGGAATAGAGGATTTATTAAAAGATTTAC AAAAATATTGCGGGTATTTTTGCCAGATTGCATTCAAAAAAGAAGCCGATAAGGATTTAAACAAGGCTTTAGGTTTTTTG GTGGATTTAGAGATGGATGTGATTTATCCGCTATTACTAGAGCTTTATAGCGATTATAGCGATGGGGTTTTATCCAAGGA TGATTTTATCCGTAGCATCGCTTTGATAGAGAGCTATATTTGCAGAAGGGCGGTGTGCGAGCTTGGCACAAATAGTCTCA ATAAAGTCTTTCCCTCTTTTACAAAGCACATCCAAAAAGACGAATATTTTAAAAGCCTAAAGGCGCATTTTGGTTGTCTG ACAGAAAAACAAAGATTTCCAAACAATGATGAGTTTAAAGATTGTTTTATTACGATAGATTTTTATAAGTTTAAAAAAAA TAAATACTTTTTTGAAAGGCTAGAAAATTTTGACACAAAAGAGCGAGTTTATACCCATGAATACACTATTGAGCACATCA TGCCTCAAACACTCACGGAACAATGGAAAAAGGATTTGGGTGAAAATTTTCAAGAGATACACGATAAATACCTCCACACA ATAGGCAATCTCACTCTAACCGCTTATAACCCTGAATACAGCAACAAATCTTTCCAAGAAAAACGAGACATGGAAAAAGG CTTCAAGGATAGCCCATTAAGGCTCAATCAAAGTTTGAGGGATTTAGAATCTTTTGGCGAAGAAGAGATTAAAAAAAGAG CTAATGATTTAGCGGATTTGGCTTTAAAGATTTGGACTTATCCAAATCTAGATGCAGAAACGCTAGAGAAATATAAACCC AAGAAAGACAAGAAAGAAAAAAAGGTTTATGATTTAAGCTCTTATAATTTTAGTTCTCATTCAAGGGAATTATTTGATAT TTTAAGCAAAGAGATTAAAGCTCTTGATGAAAAGATTGTTGAAAAATGTCATCAAAATTATATCTCTTATGGGTTTAGCA CAAATTTTGTGGCTATTAAACCGCTAAACAAAGGATTAAAATTGTATTTAAATATGAAATTCAATGAATTGCAAGATGAA AAAAATCTGGCAAGGGATACGACCGGTACAGGTAATCCAGCGAATTGGAACATAGAAGTCAAGCTAGAAACAAAAGAGAA TATCCCTTATTGTTTGGGGTTGATCAAACAGGCTTTAGAAAAACAGATGGGTGGTAGGAACAGGCAATAA
Upstream 100 bases:
>100_bases TGATAGGGGTGATTATAGCATTTATGGGGTAAAAAAAGTGAAATCTGTATCAAGTTTTATTAAGATGCATGCGGTAAAAT CAAATCAAGGAGTGTTATTT
Downstream 100 bases:
>100_bases AAACCCAACTTATTAAAATAAAGAGTATAATTACAAATTACTTAAAACTTAAAGGGGATATAATGAAGGTTCTATTACTA GAAGATGTGAAAAATTTAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 689; Mature: 689
Protein sequence:
>689_residues MEAKAMKLLDFIGKSQERQLVIPIYQRVYSWGNEQCKQLWDDIIKTGGNDQIKGHFIGSILYVHDGIYKIGHNKLLIIDG QQRLTTITLLLTALRNHWSDKRKEIEDHYLINSDKDGDEKFRLILSDSDKDTLLSLIDKDRRKPIKPSSKIMENFKLFEE WISKNTNKLETIFKGLEKLMVVYIALEKGKGNPQLIFESMNSTGKDLTETDLIRNYIVMETEIEKQEYFYNKYWRDMEEE FEQSEREDLFNKFVRHYLTIKTREIPNIKKVYAAFKDYRQKEGIGIEDLLKDLQKYCGYFCQIAFKKEADKDLNKALGFL VDLEMDVIYPLLLELYSDYSDGVLSKDDFIRSIALIESYICRRAVCELGTNSLNKVFPSFTKHIQKDEYFKSLKAHFGCL TEKQRFPNNDEFKDCFITIDFYKFKKNKYFFERLENFDTKERVYTHEYTIEHIMPQTLTEQWKKDLGENFQEIHDKYLHT IGNLTLTAYNPEYSNKSFQEKRDMEKGFKDSPLRLNQSLRDLESFGEEEIKKRANDLADLALKIWTYPNLDAETLEKYKP KKDKKEKKVYDLSSYNFSSHSRELFDILSKEIKALDEKIVEKCHQNYISYGFSTNFVAIKPLNKGLKLYLNMKFNELQDE KNLARDTTGTGNPANWNIEVKLETKENIPYCLGLIKQALEKQMGGRNRQ
Sequences:
>Translated_689_residues MEAKAMKLLDFIGKSQERQLVIPIYQRVYSWGNEQCKQLWDDIIKTGGNDQIKGHFIGSILYVHDGIYKIGHNKLLIIDG QQRLTTITLLLTALRNHWSDKRKEIEDHYLINSDKDGDEKFRLILSDSDKDTLLSLIDKDRRKPIKPSSKIMENFKLFEE WISKNTNKLETIFKGLEKLMVVYIALEKGKGNPQLIFESMNSTGKDLTETDLIRNYIVMETEIEKQEYFYNKYWRDMEEE FEQSEREDLFNKFVRHYLTIKTREIPNIKKVYAAFKDYRQKEGIGIEDLLKDLQKYCGYFCQIAFKKEADKDLNKALGFL VDLEMDVIYPLLLELYSDYSDGVLSKDDFIRSIALIESYICRRAVCELGTNSLNKVFPSFTKHIQKDEYFKSLKAHFGCL TEKQRFPNNDEFKDCFITIDFYKFKKNKYFFERLENFDTKERVYTHEYTIEHIMPQTLTEQWKKDLGENFQEIHDKYLHT IGNLTLTAYNPEYSNKSFQEKRDMEKGFKDSPLRLNQSLRDLESFGEEEIKKRANDLADLALKIWTYPNLDAETLEKYKP KKDKKEKKVYDLSSYNFSSHSRELFDILSKEIKALDEKIVEKCHQNYISYGFSTNFVAIKPLNKGLKLYLNMKFNELQDE KNLARDTTGTGNPANWNIEVKLETKENIPYCLGLIKQALEKQMGGRNRQ >Mature_689_residues MEAKAMKLLDFIGKSQERQLVIPIYQRVYSWGNEQCKQLWDDIIKTGGNDQIKGHFIGSILYVHDGIYKIGHNKLLIIDG QQRLTTITLLLTALRNHWSDKRKEIEDHYLINSDKDGDEKFRLILSDSDKDTLLSLIDKDRRKPIKPSSKIMENFKLFEE WISKNTNKLETIFKGLEKLMVVYIALEKGKGNPQLIFESMNSTGKDLTETDLIRNYIVMETEIEKQEYFYNKYWRDMEEE FEQSEREDLFNKFVRHYLTIKTREIPNIKKVYAAFKDYRQKEGIGIEDLLKDLQKYCGYFCQIAFKKEADKDLNKALGFL VDLEMDVIYPLLLELYSDYSDGVLSKDDFIRSIALIESYICRRAVCELGTNSLNKVFPSFTKHIQKDEYFKSLKAHFGCL TEKQRFPNNDEFKDCFITIDFYKFKKNKYFFERLENFDTKERVYTHEYTIEHIMPQTLTEQWKKDLGENFQEIHDKYLHT IGNLTLTAYNPEYSNKSFQEKRDMEKGFKDSPLRLNQSLRDLESFGEEEIKKRANDLADLALKIWTYPNLDAETLEKYKP KKDKKEKKVYDLSSYNFSSHSRELFDILSKEIKALDEKIVEKCHQNYISYGFSTNFVAIKPLNKGLKLYLNMKFNELQDE KNLARDTTGTGNPANWNIEVKLETKENIPYCLGLIKQALEKQMGGRNRQ
Specific function: Unknown
COG id: COG1479
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81480; Mature: 81480
Theoretical pI: Translated: 7.18; Mature: 7.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEAKAMKLLDFIGKSQERQLVIPIYQRVYSWGNEQCKQLWDDIIKTGGNDQIKGHFIGSI CCHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH LYVHDGIYKIGHNKLLIIDGQQRLTTITLLLTALRNHWSDKRKEIEDHYLINSDKDGDEK HHHHCCHHEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCE FRLILSDSDKDTLLSLIDKDRRKPIKPSSKIMENFKLFEEWISKNTNKLETIFKGLEKLM EEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH VVYIALEKGKGNPQLIFESMNSTGKDLTETDLIRNYIVMETEIEKQEYFYNKYWRDMEEE HHHHEEECCCCCHHHHEEHHCCCCCCCHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHH FEQSEREDLFNKFVRHYLTIKTREIPNIKKVYAAFKDYRQKEGIGIEDLLKDLQKYCGYF HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH CQIAFKKEADKDLNKALGFLVDLEMDVIYPLLLELYSDYSDGVLSKDDFIRSIALIESYI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH CRRAVCELGTNSLNKVFPSFTKHIQKDEYFKSLKAHFGCLTEKQRFPNNDEFKDCFITID HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE FYKFKKNKYFFERLENFDTKERVYTHEYTIEHIMPQTLTEQWKKDLGENFQEIHDKYLHT HHHHHCCHHHHHHHHCCCHHHHEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH IGNLTLTAYNPEYSNKSFQEKRDMEKGFKDSPLRLNQSLRDLESFGEEEIKKRANDLADL HCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH ALKIWTYPNLDAETLEKYKPKKDKKEKKVYDLSSYNFSSHSRELFDILSKEIKALDEKIV HHHHHCCCCCCHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH EKCHQNYISYGFSTNFVAIKPLNKGLKLYLNMKFNELQDEKNLARDTTGTGNPANWNIEV HHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCEEEEE KLETKENIPYCLGLIKQALEKQMGGRNRQ EEECCCCCHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MEAKAMKLLDFIGKSQERQLVIPIYQRVYSWGNEQCKQLWDDIIKTGGNDQIKGHFIGSI CCHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH LYVHDGIYKIGHNKLLIIDGQQRLTTITLLLTALRNHWSDKRKEIEDHYLINSDKDGDEK HHHHCCHHEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCE FRLILSDSDKDTLLSLIDKDRRKPIKPSSKIMENFKLFEEWISKNTNKLETIFKGLEKLM EEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH VVYIALEKGKGNPQLIFESMNSTGKDLTETDLIRNYIVMETEIEKQEYFYNKYWRDMEEE HHHHEEECCCCCHHHHEEHHCCCCCCCHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHH FEQSEREDLFNKFVRHYLTIKTREIPNIKKVYAAFKDYRQKEGIGIEDLLKDLQKYCGYF HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH CQIAFKKEADKDLNKALGFLVDLEMDVIYPLLLELYSDYSDGVLSKDDFIRSIALIESYI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH CRRAVCELGTNSLNKVFPSFTKHIQKDEYFKSLKAHFGCLTEKQRFPNNDEFKDCFITID HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE FYKFKKNKYFFERLENFDTKERVYTHEYTIEHIMPQTLTEQWKKDLGENFQEIHDKYLHT HHHHHCCHHHHHHHHCCCHHHHEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH IGNLTLTAYNPEYSNKSFQEKRDMEKGFKDSPLRLNQSLRDLESFGEEEIKKRANDLADL HCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH ALKIWTYPNLDAETLEKYKPKKDKKEKKVYDLSSYNFSSHSRELFDILSKEIKALDEKIV HHHHHCCCCCCHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH EKCHQNYISYGFSTNFVAIKPLNKGLKLYLNMKFNELQDEKNLARDTTGTGNPANWNIEV HHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCEEEEE KLETKENIPYCLGLIKQALEKQMGGRNRQ EEECCCCCHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]