Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188527650

Identifier: 188527650

GI number: 188527650

Start: 850275

End: 852344

Strand: Reverse

Name: 188527650

Synonym: HPSH_04360

Alternate gene names: NA

Gene position: 852344-850275 (Counterclockwise)

Preceding gene: 188527652

Following gene: 188527649

Centisome position: 52.99

GC content: 34.78

Gene sequence:

>2070_bases
ATGGAAGCAAAAGCTATGAAACTGCTAGACTTTATTGGTAAGAGTCAAGAAAGACAATTGGTTATTCCCATCTATCAGAG
GGTGTATAGTTGGGGAAATGAACAATGCAAGCAGTTATGGGATGATATTATCAAAACGGGTGGAAACGATCAAATAAAAG
GGCATTTTATCGGTTCTATTTTGTATGTGCATGATGGCATATACAAAATTGGCCACAACAAGCTTCTCATCATTGACGGC
CAACAAAGGCTCACTACTATCACGCTTTTACTCACCGCTTTAAGAAATCATTGGAGCGATAAGCGTAAAGAAATAGAGGA
CCACTATCTTATCAACAGCGATAAGGACGGCGATGAGAAATTCAGACTCATCCTCTCAGACTCTGATAAAGATACCTTGC
TATCTTTGATTGATAAAGACAGAAGAAAACCGATCAAGCCTTCATCAAAAATAATGGAAAATTTTAAATTATTTGAAGAA
TGGATCAGTAAAAACACCAACAAACTAGAAACGATTTTTAAAGGATTAGAAAAGCTTATGGTAGTTTATATTGCTTTAGA
AAAAGGAAAAGGTAATCCTCAACTTATCTTTGAGAGCATGAACTCAACGGGCAAGGATCTCACGGAAACGGATTTGATCA
GAAACTATATCGTGATGGAAACAGAGATTGAAAAGCAAGAATACTTTTATAATAAATACTGGAGGGATATGGAGGAGGAA
TTTGAACAGAGTGAGAGAGAGGATTTATTTAATAAATTTGTCCGGCATTACCTCACGATCAAAACAAGAGAAATCCCTAA
TATCAAGAAGGTTTATGCAGCTTTCAAGGATTACCGGCAAAAAGAGGGGATAGGAATAGAGGATTTATTAAAAGATTTAC
AAAAATATTGCGGGTATTTTTGCCAGATTGCATTCAAAAAAGAAGCCGATAAGGATTTAAACAAGGCTTTAGGTTTTTTG
GTGGATTTAGAGATGGATGTGATTTATCCGCTATTACTAGAGCTTTATAGCGATTATAGCGATGGGGTTTTATCCAAGGA
TGATTTTATCCGTAGCATCGCTTTGATAGAGAGCTATATTTGCAGAAGGGCGGTGTGCGAGCTTGGCACAAATAGTCTCA
ATAAAGTCTTTCCCTCTTTTACAAAGCACATCCAAAAAGACGAATATTTTAAAAGCCTAAAGGCGCATTTTGGTTGTCTG
ACAGAAAAACAAAGATTTCCAAACAATGATGAGTTTAAAGATTGTTTTATTACGATAGATTTTTATAAGTTTAAAAAAAA
TAAATACTTTTTTGAAAGGCTAGAAAATTTTGACACAAAAGAGCGAGTTTATACCCATGAATACACTATTGAGCACATCA
TGCCTCAAACACTCACGGAACAATGGAAAAAGGATTTGGGTGAAAATTTTCAAGAGATACACGATAAATACCTCCACACA
ATAGGCAATCTCACTCTAACCGCTTATAACCCTGAATACAGCAACAAATCTTTCCAAGAAAAACGAGACATGGAAAAAGG
CTTCAAGGATAGCCCATTAAGGCTCAATCAAAGTTTGAGGGATTTAGAATCTTTTGGCGAAGAAGAGATTAAAAAAAGAG
CTAATGATTTAGCGGATTTGGCTTTAAAGATTTGGACTTATCCAAATCTAGATGCAGAAACGCTAGAGAAATATAAACCC
AAGAAAGACAAGAAAGAAAAAAAGGTTTATGATTTAAGCTCTTATAATTTTAGTTCTCATTCAAGGGAATTATTTGATAT
TTTAAGCAAAGAGATTAAAGCTCTTGATGAAAAGATTGTTGAAAAATGTCATCAAAATTATATCTCTTATGGGTTTAGCA
CAAATTTTGTGGCTATTAAACCGCTAAACAAAGGATTAAAATTGTATTTAAATATGAAATTCAATGAATTGCAAGATGAA
AAAAATCTGGCAAGGGATACGACCGGTACAGGTAATCCAGCGAATTGGAACATAGAAGTCAAGCTAGAAACAAAAGAGAA
TATCCCTTATTGTTTGGGGTTGATCAAACAGGCTTTAGAAAAACAGATGGGTGGTAGGAACAGGCAATAA

Upstream 100 bases:

>100_bases
TGATAGGGGTGATTATAGCATTTATGGGGTAAAAAAAGTGAAATCTGTATCAAGTTTTATTAAGATGCATGCGGTAAAAT
CAAATCAAGGAGTGTTATTT

Downstream 100 bases:

>100_bases
AAACCCAACTTATTAAAATAAAGAGTATAATTACAAATTACTTAAAACTTAAAGGGGATATAATGAAGGTTCTATTACTA
GAAGATGTGAAAAATTTAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 689; Mature: 689

Protein sequence:

>689_residues
MEAKAMKLLDFIGKSQERQLVIPIYQRVYSWGNEQCKQLWDDIIKTGGNDQIKGHFIGSILYVHDGIYKIGHNKLLIIDG
QQRLTTITLLLTALRNHWSDKRKEIEDHYLINSDKDGDEKFRLILSDSDKDTLLSLIDKDRRKPIKPSSKIMENFKLFEE
WISKNTNKLETIFKGLEKLMVVYIALEKGKGNPQLIFESMNSTGKDLTETDLIRNYIVMETEIEKQEYFYNKYWRDMEEE
FEQSEREDLFNKFVRHYLTIKTREIPNIKKVYAAFKDYRQKEGIGIEDLLKDLQKYCGYFCQIAFKKEADKDLNKALGFL
VDLEMDVIYPLLLELYSDYSDGVLSKDDFIRSIALIESYICRRAVCELGTNSLNKVFPSFTKHIQKDEYFKSLKAHFGCL
TEKQRFPNNDEFKDCFITIDFYKFKKNKYFFERLENFDTKERVYTHEYTIEHIMPQTLTEQWKKDLGENFQEIHDKYLHT
IGNLTLTAYNPEYSNKSFQEKRDMEKGFKDSPLRLNQSLRDLESFGEEEIKKRANDLADLALKIWTYPNLDAETLEKYKP
KKDKKEKKVYDLSSYNFSSHSRELFDILSKEIKALDEKIVEKCHQNYISYGFSTNFVAIKPLNKGLKLYLNMKFNELQDE
KNLARDTTGTGNPANWNIEVKLETKENIPYCLGLIKQALEKQMGGRNRQ

Sequences:

>Translated_689_residues
MEAKAMKLLDFIGKSQERQLVIPIYQRVYSWGNEQCKQLWDDIIKTGGNDQIKGHFIGSILYVHDGIYKIGHNKLLIIDG
QQRLTTITLLLTALRNHWSDKRKEIEDHYLINSDKDGDEKFRLILSDSDKDTLLSLIDKDRRKPIKPSSKIMENFKLFEE
WISKNTNKLETIFKGLEKLMVVYIALEKGKGNPQLIFESMNSTGKDLTETDLIRNYIVMETEIEKQEYFYNKYWRDMEEE
FEQSEREDLFNKFVRHYLTIKTREIPNIKKVYAAFKDYRQKEGIGIEDLLKDLQKYCGYFCQIAFKKEADKDLNKALGFL
VDLEMDVIYPLLLELYSDYSDGVLSKDDFIRSIALIESYICRRAVCELGTNSLNKVFPSFTKHIQKDEYFKSLKAHFGCL
TEKQRFPNNDEFKDCFITIDFYKFKKNKYFFERLENFDTKERVYTHEYTIEHIMPQTLTEQWKKDLGENFQEIHDKYLHT
IGNLTLTAYNPEYSNKSFQEKRDMEKGFKDSPLRLNQSLRDLESFGEEEIKKRANDLADLALKIWTYPNLDAETLEKYKP
KKDKKEKKVYDLSSYNFSSHSRELFDILSKEIKALDEKIVEKCHQNYISYGFSTNFVAIKPLNKGLKLYLNMKFNELQDE
KNLARDTTGTGNPANWNIEVKLETKENIPYCLGLIKQALEKQMGGRNRQ
>Mature_689_residues
MEAKAMKLLDFIGKSQERQLVIPIYQRVYSWGNEQCKQLWDDIIKTGGNDQIKGHFIGSILYVHDGIYKIGHNKLLIIDG
QQRLTTITLLLTALRNHWSDKRKEIEDHYLINSDKDGDEKFRLILSDSDKDTLLSLIDKDRRKPIKPSSKIMENFKLFEE
WISKNTNKLETIFKGLEKLMVVYIALEKGKGNPQLIFESMNSTGKDLTETDLIRNYIVMETEIEKQEYFYNKYWRDMEEE
FEQSEREDLFNKFVRHYLTIKTREIPNIKKVYAAFKDYRQKEGIGIEDLLKDLQKYCGYFCQIAFKKEADKDLNKALGFL
VDLEMDVIYPLLLELYSDYSDGVLSKDDFIRSIALIESYICRRAVCELGTNSLNKVFPSFTKHIQKDEYFKSLKAHFGCL
TEKQRFPNNDEFKDCFITIDFYKFKKNKYFFERLENFDTKERVYTHEYTIEHIMPQTLTEQWKKDLGENFQEIHDKYLHT
IGNLTLTAYNPEYSNKSFQEKRDMEKGFKDSPLRLNQSLRDLESFGEEEIKKRANDLADLALKIWTYPNLDAETLEKYKP
KKDKKEKKVYDLSSYNFSSHSRELFDILSKEIKALDEKIVEKCHQNYISYGFSTNFVAIKPLNKGLKLYLNMKFNELQDE
KNLARDTTGTGNPANWNIEVKLETKENIPYCLGLIKQALEKQMGGRNRQ

Specific function: Unknown

COG id: COG1479

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 81480; Mature: 81480

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAKAMKLLDFIGKSQERQLVIPIYQRVYSWGNEQCKQLWDDIIKTGGNDQIKGHFIGSI
CCHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LYVHDGIYKIGHNKLLIIDGQQRLTTITLLLTALRNHWSDKRKEIEDHYLINSDKDGDEK
HHHHCCHHEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCE
FRLILSDSDKDTLLSLIDKDRRKPIKPSSKIMENFKLFEEWISKNTNKLETIFKGLEKLM
EEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VVYIALEKGKGNPQLIFESMNSTGKDLTETDLIRNYIVMETEIEKQEYFYNKYWRDMEEE
HHHHEEECCCCCHHHHEEHHCCCCCCCHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHH
FEQSEREDLFNKFVRHYLTIKTREIPNIKKVYAAFKDYRQKEGIGIEDLLKDLQKYCGYF
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
CQIAFKKEADKDLNKALGFLVDLEMDVIYPLLLELYSDYSDGVLSKDDFIRSIALIESYI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
CRRAVCELGTNSLNKVFPSFTKHIQKDEYFKSLKAHFGCLTEKQRFPNNDEFKDCFITID
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
FYKFKKNKYFFERLENFDTKERVYTHEYTIEHIMPQTLTEQWKKDLGENFQEIHDKYLHT
HHHHHCCHHHHHHHHCCCHHHHEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
IGNLTLTAYNPEYSNKSFQEKRDMEKGFKDSPLRLNQSLRDLESFGEEEIKKRANDLADL
HCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
ALKIWTYPNLDAETLEKYKPKKDKKEKKVYDLSSYNFSSHSRELFDILSKEIKALDEKIV
HHHHHCCCCCCHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
EKCHQNYISYGFSTNFVAIKPLNKGLKLYLNMKFNELQDEKNLARDTTGTGNPANWNIEV
HHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCEEEEE
KLETKENIPYCLGLIKQALEKQMGGRNRQ
EEECCCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MEAKAMKLLDFIGKSQERQLVIPIYQRVYSWGNEQCKQLWDDIIKTGGNDQIKGHFIGSI
CCHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LYVHDGIYKIGHNKLLIIDGQQRLTTITLLLTALRNHWSDKRKEIEDHYLINSDKDGDEK
HHHHCCHHEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCE
FRLILSDSDKDTLLSLIDKDRRKPIKPSSKIMENFKLFEEWISKNTNKLETIFKGLEKLM
EEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VVYIALEKGKGNPQLIFESMNSTGKDLTETDLIRNYIVMETEIEKQEYFYNKYWRDMEEE
HHHHEEECCCCCHHHHEEHHCCCCCCCHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHH
FEQSEREDLFNKFVRHYLTIKTREIPNIKKVYAAFKDYRQKEGIGIEDLLKDLQKYCGYF
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
CQIAFKKEADKDLNKALGFLVDLEMDVIYPLLLELYSDYSDGVLSKDDFIRSIALIESYI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
CRRAVCELGTNSLNKVFPSFTKHIQKDEYFKSLKAHFGCLTEKQRFPNNDEFKDCFITID
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
FYKFKKNKYFFERLENFDTKERVYTHEYTIEHIMPQTLTEQWKKDLGENFQEIHDKYLHT
HHHHHCCHHHHHHHHCCCHHHHEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
IGNLTLTAYNPEYSNKSFQEKRDMEKGFKDSPLRLNQSLRDLESFGEEEIKKRANDLADL
HCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
ALKIWTYPNLDAETLEKYKPKKDKKEKKVYDLSSYNFSSHSRELFDILSKEIKALDEKIV
HHHHHCCCCCCHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
EKCHQNYISYGFSTNFVAIKPLNKGLKLYLNMKFNELQDEKNLARDTTGTGNPANWNIEV
HHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCEEEEE
KLETKENIPYCLGLIKQALEKQMGGRNRQ
EEECCCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]