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The map label for this gene is ywhC [H]

Identifier: 188527578

GI number: 188527578

Start: 782122

End: 782820

Strand: Direct

Name: ywhC [H]

Synonym: HPSH_04000

Alternate gene names: 188527578

Gene position: 782122-782820 (Clockwise)

Preceding gene: 188527577

Following gene: 188527579

Centisome position: 48.62

GC content: 40.92

Gene sequence:

>699_bases
GTGCAATTTTTTGATTCCTCTTTAGAAAGTTTTATCACCACCTTAATGAAGATTCTAGCCCTTTTAATCGCTATCATAGG
GCATGAGATCATGCATGGCTTGAGTGCATTTTTATTTGGGGATAGGAGCGCTAAAGACGCTAATCGTTTGAGTTTAAACC
CTATCAGGCATTTAGACATGATGGGATCGGTGCTTTTACCGGCTTTATTACTCATTTTTCAAGCCCCTTTTTTGTTTGGG
TGGGCTAAACCCGTGCCCGTGGATATGCGCTATATTGTTTCTCAAAAAGGCTCTCTAGCATGCGTAGTGGTGAGTTTAGC
CGGGGTGGCTTATAATTTCACTCTGGCCGTTCTGCTCGCTTCCATCACGCATTTGAGCTTCCAAAAACTAGGGATCAACG
CTTTAAGCATCAATGAGTTGAACCTTTATCAGCTCGCTTTAGTAACTTTTCTCATTCAAGGCATTCTTTATAATCTTGTC
TTAGGCGTTTTCAACAGCCTCCCTATCCCGCCCTTAGACGGATCCAAAGCGTTAGGCTTTTTAGCGTTGCATTTTAAAAG
CGCGTTTTTATTGGAATGGTTTTCTAAAATGGAACGCTACGGCTTGTTGGTAGTGTTTATCTTTTTGTTTATCCCCCCTT
TATCGGAGTTTTTTATCCATGCACCCACAAGATTTTTATTTTACTTACTCCTTTCTTAA

Upstream 100 bases:

>100_bases
CCAAAAAACGCTATTTGGTGCGTTGGGAGCGCATGTTTAAAAGCGTTGAAGGCTTAGAAAAAATCATTAAAAAAGAAAAA
GCAACGCCTTAAGGTTTTTT

Downstream 100 bases:

>100_bases
TCTTTCATCAAGGAGAGTTTATGAATAAGCCCTTAAAGCCTTCTCAAATTTTTATAGGAAGCGATCATGCAGGGTTGCAT
CTTGCAAAGTTTGTCCAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MQFFDSSLESFITTLMKILALLIAIIGHEIMHGLSAFLFGDRSAKDANRLSLNPIRHLDMMGSVLLPALLLIFQAPFLFG
WAKPVPVDMRYIVSQKGSLACVVVSLAGVAYNFTLAVLLASITHLSFQKLGINALSINELNLYQLALVTFLIQGILYNLV
LGVFNSLPIPPLDGSKALGFLALHFKSAFLLEWFSKMERYGLLVVFIFLFIPPLSEFFIHAPTRFLFYLLLS

Sequences:

>Translated_232_residues
MQFFDSSLESFITTLMKILALLIAIIGHEIMHGLSAFLFGDRSAKDANRLSLNPIRHLDMMGSVLLPALLLIFQAPFLFG
WAKPVPVDMRYIVSQKGSLACVVVSLAGVAYNFTLAVLLASITHLSFQKLGINALSINELNLYQLALVTFLIQGILYNLV
LGVFNSLPIPPLDGSKALGFLALHFKSAFLLEWFSKMERYGLLVVFIFLFIPPLSEFFIHAPTRFLFYLLLS
>Mature_232_residues
MQFFDSSLESFITTLMKILALLIAIIGHEIMHGLSAFLFGDRSAKDANRLSLNPIRHLDMMGSVLLPALLLIFQAPFLFG
WAKPVPVDMRYIVSQKGSLACVVVSLAGVAYNFTLAVLLASITHLSFQKLGINALSINELNLYQLALVTFLIQGILYNLV
LGVFNSLPIPPLDGSKALGFLALHFKSAFLLEWFSKMERYGLLVVFIFLFIPPLSEFFIHAPTRFLFYLLLS

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 25873; Mature: 25873

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS00583 PFKB_KINASES_1 ; PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFFDSSLESFITTLMKILALLIAIIGHEIMHGLSAFLFGDRSAKDANRLSLNPIRHLDM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
MGSVLLPALLLIFQAPFLFGWAKPVPVDMRYIVSQKGSLACVVVSLAGVAYNFTLAVLLA
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
SITHLSFQKLGINALSINELNLYQLALVTFLIQGILYNLVLGVFNSLPIPPLDGSKALGF
HHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
LALHFKSAFLLEWFSKMERYGLLVVFIFLFIPPLSEFFIHAPTRFLFYLLLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCC
>Mature Secondary Structure
MQFFDSSLESFITTLMKILALLIAIIGHEIMHGLSAFLFGDRSAKDANRLSLNPIRHLDM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
MGSVLLPALLLIFQAPFLFGWAKPVPVDMRYIVSQKGSLACVVVSLAGVAYNFTLAVLLA
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
SITHLSFQKLGINALSINELNLYQLALVTFLIQGILYNLVLGVFNSLPIPPLDGSKALGF
HHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
LALHFKSAFLLEWFSKMERYGLLVVFIFLFIPPLSEFFIHAPTRFLFYLLLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]