| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527575
Identifier: 188527575
GI number: 188527575
Start: 778264
End: 780291
Strand: Direct
Name: 188527575
Synonym: HPSH_03985
Alternate gene names: NA
Gene position: 778264-780291 (Clockwise)
Preceding gene: 188527574
Following gene: 188527576
Centisome position: 48.38
GC content: 36.59
Gene sequence:
>2028_bases ATGAAATCCCTATCCCATGCCCTTTTTTCGCTCTTTTTAAAAGGTTTTTATTTCACCTTTTTTATGAGTTTGTTGTTTGT GTTTAATCGTATCGGCTTTATCCTTTATACTGGCTATTATAAGCATGCTTTAAAAAACCCTATTTTTGATGAAATCATCA AAACCCTATTCAATGGAGCAAGATACGATAATCGTGTGGTCTCAAGCCTGGCGATTCTTTTTATCATCATCGGGTTATTA GGGTTATTTGCCCCTAAACACCAAACCAAAATGCTTAATATTACGGCGTATTTTTCTATCGCTATTATCCTGTTTTTAAA CATTGCAAACATTGTTTATTATGGTATTTATGGGAATGTGTTTGATGAAAATTTATTGGAATTTTTGCATGAAGACACGC TCACGATTTTAAAAATGAGCGGGGAATACCCTATTTTTTCCAGTTTTTCACTCTTTGTGATTCTTAGCGTTTTAATCTCT TTTATTTATTTCAAACTCCAAAACGCCCTTTTTAAACCCAATGTTTATCAAGCCACCAAACCCCTTAAAACTTTCATTTT ATTTGCGCTTTTTTCGCTCACGCAAATGTTTTACATTAACGCGCAATTGAGCTTTGTTGGCGCGTCTTTAGATCTCAGCA TAGAGCCAGCCAAAGATCCTTTTTTAATGAAAATCACCCCCGGTGCGTTTCGCAACCTTTATCTTTTGGCACGCAATTAC AGACAAAGCCACAACCTTAAATTCAGCGATTTTGCTAAAGGATCGCCCCTAGAAGTGGCGAAAAATTATTTCAATCTTAA AGAAAACCCCTCAAACAACCTCTATGAGTTGCTAACTCAAACAAGCCGCAACAATTCCAATCAAACCATTCAACATGTTT TTTATATCGTTTCAGAGTCTTTGAGTTCATGGCATTTTGATCCAAAATTTGACGCCATAGGGCTAACGAGCGCTTTACAA GATTTGGTTAAAAAAGAGCATGCCTATATGCTTTCTGCTTTTATTGAAAGCGCCCCACGAACCGTTAAAAGCCTAGATGT CCAAATCACAGGCTTGCCTTATATCAATGATAATAATTTAGTCAATTCAGGAGTGATTCTTCCTAGCTTTCCTATGGCGA TTGGCAATATCACAAAAACCCTGGGTTATAAAAACAACTTTTATTATGGGGGTAGCGGGATTTGGAACAAACTAACTAGT TTCACCAAAAAACAAGGTTTTCACGCCCTTTATTTCAATAACCACCTCTTAGAATTTGCCAAAAACAAGCCCTACCCTAA GCCCATAGAGAGCAACTGGGGAGTGCATGATAATATTTTATTTGACTATATTTTAGAAAACACCAACCCCAATGAAAAAA CTTTCAGCATGGTCATGACTTTAAGCAACCACGCGATCAAAAATGTGAATCTCAAAGCCTTTGGCGTGCCTTTAGAAAAA ATCCAAAAATTTGTGGAAAAAACCCCCAAATCAGAAAATCTACCGGACGCTAATTCTTTAGGGCATATTTATTGGTATGA CAAAGTAATAGTCAATTTCATCCAAAAAGCCAGCCAAAAATTCCCTAATTCGCTTTTTATCATCACAGGGGATCATTTTG ACAGGAGCTATGAATACGCTAAAAACGATTTATATACGATTAAATCCGTGCCGCTTATTTTGTTCGCCCCTACTTTAAAG CCTGAAAAAATCAGTCAAGTCGGATCGCATTTAGACATCGCCCCTACGATTGTTGAATTAATCGCTCCTAAAGGTTTTCA ATTTGTGAGTTTTGGCAAGCCTTTATTTTCTAACAATACAACAAACCCTCCAAGCCACCCCAATTACGCGCTAGGTTATG AAGCGATCGCTACCAAAGATTATTTTTATAACCCCAGTTTGGGGTTAAGGTATTTGAATGAAAATTACAAAGAACAAAAG GATGAACAAAGCGACAAAATAAAAGCTTCTGAGTTTTACCAGCAATTAGAATCCTTAAAAGCTCTCAGTTATTACTTGCT CTATCATGGGGCTAATCTTAAAGATTGA
Upstream 100 bases:
>100_bases CTAATTTTCAAATCTTAGATTCTTTATTGGATTTCCCCTTGCTTCTTTTTGTCTTTTTTAAGACTTTATCTCTTGTTAAA AAAAGGTTGTATTAACGCTC
Downstream 100 bases:
>100_bases CAAACTGAGTTTTTATCCATTAAACGCATGATTTTTGCTACAATAATAGGATTTTAATGGATAAAGGACAATAAGCATGC CAAATAGAGGCGTTGTTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: Phosphoglycerol Transferase; Alkaline Phosphatase; Phosphoglycerol Transferase And Related Proteins; Phosphoglycerol Transferase-Like Protein; Phosphoglycerol Transferase Related Protein; Arylsulfatase; Phosphoglycerol Transferase-Related Protein
Number of amino acids: Translated: 675; Mature: 675
Protein sequence:
>675_residues MKSLSHALFSLFLKGFYFTFFMSLLFVFNRIGFILYTGYYKHALKNPIFDEIIKTLFNGARYDNRVVSSLAILFIIIGLL GLFAPKHQTKMLNITAYFSIAIILFLNIANIVYYGIYGNVFDENLLEFLHEDTLTILKMSGEYPIFSSFSLFVILSVLIS FIYFKLQNALFKPNVYQATKPLKTFILFALFSLTQMFYINAQLSFVGASLDLSIEPAKDPFLMKITPGAFRNLYLLARNY RQSHNLKFSDFAKGSPLEVAKNYFNLKENPSNNLYELLTQTSRNNSNQTIQHVFYIVSESLSSWHFDPKFDAIGLTSALQ DLVKKEHAYMLSAFIESAPRTVKSLDVQITGLPYINDNNLVNSGVILPSFPMAIGNITKTLGYKNNFYYGGSGIWNKLTS FTKKQGFHALYFNNHLLEFAKNKPYPKPIESNWGVHDNILFDYILENTNPNEKTFSMVMTLSNHAIKNVNLKAFGVPLEK IQKFVEKTPKSENLPDANSLGHIYWYDKVIVNFIQKASQKFPNSLFIITGDHFDRSYEYAKNDLYTIKSVPLILFAPTLK PEKISQVGSHLDIAPTIVELIAPKGFQFVSFGKPLFSNNTTNPPSHPNYALGYEAIATKDYFYNPSLGLRYLNENYKEQK DEQSDKIKASEFYQQLESLKALSYYLLYHGANLKD
Sequences:
>Translated_675_residues MKSLSHALFSLFLKGFYFTFFMSLLFVFNRIGFILYTGYYKHALKNPIFDEIIKTLFNGARYDNRVVSSLAILFIIIGLL GLFAPKHQTKMLNITAYFSIAIILFLNIANIVYYGIYGNVFDENLLEFLHEDTLTILKMSGEYPIFSSFSLFVILSVLIS FIYFKLQNALFKPNVYQATKPLKTFILFALFSLTQMFYINAQLSFVGASLDLSIEPAKDPFLMKITPGAFRNLYLLARNY RQSHNLKFSDFAKGSPLEVAKNYFNLKENPSNNLYELLTQTSRNNSNQTIQHVFYIVSESLSSWHFDPKFDAIGLTSALQ DLVKKEHAYMLSAFIESAPRTVKSLDVQITGLPYINDNNLVNSGVILPSFPMAIGNITKTLGYKNNFYYGGSGIWNKLTS FTKKQGFHALYFNNHLLEFAKNKPYPKPIESNWGVHDNILFDYILENTNPNEKTFSMVMTLSNHAIKNVNLKAFGVPLEK IQKFVEKTPKSENLPDANSLGHIYWYDKVIVNFIQKASQKFPNSLFIITGDHFDRSYEYAKNDLYTIKSVPLILFAPTLK PEKISQVGSHLDIAPTIVELIAPKGFQFVSFGKPLFSNNTTNPPSHPNYALGYEAIATKDYFYNPSLGLRYLNENYKEQK DEQSDKIKASEFYQQLESLKALSYYLLYHGANLKD >Mature_675_residues MKSLSHALFSLFLKGFYFTFFMSLLFVFNRIGFILYTGYYKHALKNPIFDEIIKTLFNGARYDNRVVSSLAILFIIIGLL GLFAPKHQTKMLNITAYFSIAIILFLNIANIVYYGIYGNVFDENLLEFLHEDTLTILKMSGEYPIFSSFSLFVILSVLIS FIYFKLQNALFKPNVYQATKPLKTFILFALFSLTQMFYINAQLSFVGASLDLSIEPAKDPFLMKITPGAFRNLYLLARNY RQSHNLKFSDFAKGSPLEVAKNYFNLKENPSNNLYELLTQTSRNNSNQTIQHVFYIVSESLSSWHFDPKFDAIGLTSALQ DLVKKEHAYMLSAFIESAPRTVKSLDVQITGLPYINDNNLVNSGVILPSFPMAIGNITKTLGYKNNFYYGGSGIWNKLTS FTKKQGFHALYFNNHLLEFAKNKPYPKPIESNWGVHDNILFDYILENTNPNEKTFSMVMTLSNHAIKNVNLKAFGVPLEK IQKFVEKTPKSENLPDANSLGHIYWYDKVIVNFIQKASQKFPNSLFIITGDHFDRSYEYAKNDLYTIKSVPLILFAPTLK PEKISQVGSHLDIAPTIVELIAPKGFQFVSFGKPLFSNNTTNPPSHPNYALGYEAIATKDYFYNPSLGLRYLNENYKEQK DEQSDKIKASEFYQQLESLKALSYYLLYHGANLKD
Specific function: Unknown
COG id: COG1368
COG function: function code M; Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77252; Mature: 77252
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSLSHALFSLFLKGFYFTFFMSLLFVFNRIGFILYTGYYKHALKNPIFDEIIKTLFNGA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHCCCHHHHHHHHHHCCC RYDNRVVSSLAILFIIIGLLGLFAPKHQTKMLNITAYFSIAIILFLNIANIVYYGIYGNV CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHEECCCCCH FDENLLEFLHEDTLTILKMSGEYPIFSSFSLFVILSVLISFIYFKLQNALFKPNVYQATK HHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH PLKTFILFALFSLTQMFYINAQLSFVGASLDLSIEPAKDPFLMKITPGAFRNLYLLARNY HHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEECCCCCCEEEEECCHHHHHHHHHHHHH RQSHNLKFSDFAKGSPLEVAKNYFNLKENPSNNLYELLTQTSRNNSNQTIQHVFYIVSES HHHCCCCCHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH LSSWHFDPKFDAIGLTSALQDLVKKEHAYMLSAFIESAPRTVKSLDVQITGLPYINDNNL HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCEEEEEECCEECCCCC VNSGVILPSFPMAIGNITKTLGYKNNFYYGGSGIWNKLTSFTKKQGFHALYFNNHLLEFA CCCCEECCCCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHHH KNKPYPKPIESNWGVHDNILFDYILENTNPNEKTFSMVMTLSNHAIKNVNLKAFGVPLEK CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHH IQKFVEKTPKSENLPDANSLGHIYWYDKVIVNFIQKASQKFPNSLFIITGDHFDRSYEYA HHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHH KNDLYTIKSVPLILFAPTLKPEKISQVGSHLDIAPTIVELIAPKGFQFVSFGKPLFSNNT CCCEEEEECCCEEEEECCCCHHHHHHHCCCCCHHHHHHHHHCCCCCEEEECCCCHHCCCC TNPPSHPNYALGYEAIATKDYFYNPSLGLRYLNENYKEQKDEQSDKIKASEFYQQLESLK CCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH ALSYYLLYHGANLKD HHHHHHHHCCCCCCC >Mature Secondary Structure MKSLSHALFSLFLKGFYFTFFMSLLFVFNRIGFILYTGYYKHALKNPIFDEIIKTLFNGA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHCCCHHHHHHHHHHCCC RYDNRVVSSLAILFIIIGLLGLFAPKHQTKMLNITAYFSIAIILFLNIANIVYYGIYGNV CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHEECCCCCH FDENLLEFLHEDTLTILKMSGEYPIFSSFSLFVILSVLISFIYFKLQNALFKPNVYQATK HHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH PLKTFILFALFSLTQMFYINAQLSFVGASLDLSIEPAKDPFLMKITPGAFRNLYLLARNY HHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEECCCCCCEEEEECCHHHHHHHHHHHHH RQSHNLKFSDFAKGSPLEVAKNYFNLKENPSNNLYELLTQTSRNNSNQTIQHVFYIVSES HHHCCCCCHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH LSSWHFDPKFDAIGLTSALQDLVKKEHAYMLSAFIESAPRTVKSLDVQITGLPYINDNNL HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCEEEEEECCEECCCCC VNSGVILPSFPMAIGNITKTLGYKNNFYYGGSGIWNKLTSFTKKQGFHALYFNNHLLEFA CCCCEECCCCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHHH KNKPYPKPIESNWGVHDNILFDYILENTNPNEKTFSMVMTLSNHAIKNVNLKAFGVPLEK CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHH IQKFVEKTPKSENLPDANSLGHIYWYDKVIVNFIQKASQKFPNSLFIITGDHFDRSYEYA HHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHH KNDLYTIKSVPLILFAPTLKPEKISQVGSHLDIAPTIVELIAPKGFQFVSFGKPLFSNNT CCCEEEEECCCEEEEECCCCHHHHHHHCCCCCHHHHHHHHHCCCCCEEEECCCCHHCCCC TNPPSHPNYALGYEAIATKDYFYNPSLGLRYLNENYKEQKDEQSDKIKASEFYQQLESLK CCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH ALSYYLLYHGANLKD HHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA