Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188527566

Identifier: 188527566

GI number: 188527566

Start: 769500

End: 772433

Strand: Direct

Name: 188527566

Synonym: HPSH_03940

Alternate gene names: NA

Gene position: 769500-772433 (Clockwise)

Preceding gene: 188527556

Following gene: 188527567

Centisome position: 47.84

GC content: 35.21

Gene sequence:

>2934_bases
ATGAATAAAAGAAGAAACATATCCAAGAAAGTATTTAATGTCATTATCTTGTTTGTGGCAGTATTCACTCTTTTATTTGT
CATCCATAAGACCCTTTCAAACGGCATTCACATACAAAATTTAAAAATTGGAAAGCTTGGCATTTCTGAATTATACTTAA
AACTTAATAACAAGCTTTCTTTAGAAGTTGAACGGGTTGATCTATCTGCTTTCTTCCATCAAAAACCCACTAAAAAGCGT
TTAGAAGTTTCTGATCTGATTAAAAATATCCGTTATGGCATTTGGGCGGTGTCTTATTTTGAAAAGCTTAAAGTCAAAGA
AATCATTTTAGATGATAAAAATAAAGCCAATATCTTTTTTGATGGGAATAAATACGAGTTAGAATTCCCGGGAGTCAAAG
GGGAATTTTCCCTAGAAGATGATAAAAATATCAAGCTTAAAATCATCAATCTGCTTTTTAAAGATATTAAAGTCCAAGTA
GATGGCAACGCCCACTATTCACCCAAAGCTAGGAAAATGGCGTTCAATTTGATCGTCAAGCCCTTAATTGAACCCAGCGC
TGCAATTTATTTGCAAGGGCTAACCGATTTAAAAACCATAGAATTAAAAATTAACACTTCTCCAATGAAAAGCCTAGCGT
TTTTAAAGCCTCTTTTCCAACGCCAATCGCAAAAAAATTTAAAAACATGGATTTTTGATAAAATCCAATTCGCTAGCTTT
AAGATTGATAACGCTTCAATCAAGGCCAATTTCACTCCTAGCGAGTTTATCCCATCGCTTTTGGAAAATTCTGTAGTTAA
AGCCACTTTGATTAAACCTTCAGTCGTTTTTAATGATGGCTTATCGCCCATTAAAATGGATAAAACCGAATTGATCTTTA
AAAACAAACAGCTTCTCATACAGCCCCAAAAAATCACTTATGAAACCATGGAATTAAACGGCTCTTACGCCACTTTTTCC
AATTTGTTAGAAGCCCCTAAGTTGGAGGTTTTTTTAAAAACGACCCCTAATTATTATGGCGATAGCATTAAGGATTTATT
GAGCGCTTATAAAGTCGTTTTACCTTTGGATAAAATCAGCACGCCATCTAGCGCGGATTTGAAACTCACCTTGCAATTCT
TAAAAAACACCGCCCCTTTATTTAGCGTTCAAGGCAATGTTAATTTGCAAGAAGGCACCCTCTCGCTCTATAATATCCCC
CTTTATACGCAAAACGCTAGCGTGAACCTAGATATTACCCAAGAATACCAATACATCTACATAGAAACTACCCACACCCG
CTATGAAAACATGCTGGATTTGGACGCTAAAATCGCTTTAGATTTGAATAAAAAAACCCTTTCTTTGGATTCTTTAGTCC
ATAAAATACGATTCAACACTAACAATAATATCAACATGCGTTCTTATGGCTTGAATAACGACCCAGATAACCCACAGCCT
ACTAAATTTTCTTTAGATTTAAAAAGCTTGCATTCTATTATTCAAGAGAGTGAAAACTCAGAGGCGTTTAGAAGAAAAAT
CATAGACACCATTAAAGCCCAAAGTGAAGACAAATTCACTAAAGATGTTTTCTACGCTACAGAAGACACTCTTAAAAACC
TTTCTTTGAATTTTGATTTTTCTAACCCCAGCCACATGCAATGGAGCGTGCCACAACTTTTATTAGAGGGCGAATTTAAA
GATAACGCCTATGTTTTTAGAATCAAAGATTTGAAAAAAATCAAGCCCTATTCCCCTATTATGAAATATTTCGCCTTAGA
AGATGGCTCTTTAGAAGTTTCTACGAGCGATTTTGTCAATATTGATTTTTTTGCTAAGGATTTAAAAATCACTTTACCCA
TCTATCATAGCAACGGCATGCAATTCAATTCCCTCTCTTTATTTGGCTCTATTAATAAAGATGAAATTTCTGTCTATACT
CCAAGCAAAAGCATATCTATAAAAGTTAGGGGGGATCAAAAGGATATTACCCTTAATAACATTGATTTGAGTATTGATGA
TTTTTTAGATAGCAAGATGCCAGCTATTGCGGGATTATTCTCAAAAGAACGAAAAGAAAAGCCCAGTTCTAAAGAAATCC
AAGATGAAGATATTTTCATTAGCGCCAAACAACGCTATGAAAAAGCCCACAAAATTATCCCTATCTCTACACGCATCCAT
GCTAAAGATGTCGTGTTAATCTATAAAAAAATGCCTTTTCCTTTAGAAAATCTTGATATTGTCGCTCAAGATGATAGAGT
GAAAATTGATGGCAATTATAAAAACGGCATGATCATGGCGGATTTAGTGCATGGGGCTTTGTATCTTAAGGCTCATAATT
TTAGCGGGGATTATATCAATACCATCCTCCAAAAAGATTTCGTAGAAGGGGGCTTATTCACGCTTATTGGGGCTCTTGAA
GATCAGGTTTTCAACGGCGAATTGAAATTCCAAAACACAAGCTTAAAGAATTTCGCTCTCATGCAAAATATGGTCAATCT
CATCAACACCATTCCCTCTCTCATTGTCTTTAGGAACCCTCATTTAGGGGCTAACGGCTATCAAATCAAAAAGGGGTCTG
TTGTTTTTGGGATCACTAAAGAATATTTAGGGTTAGAAAAAATTGATCTTATCGGCAAAACGCTTGATATTGCTGGCAAT
GGGATCATTGAATTAGACAAGAACAAATTGGATTTGAATTTAGAAGTTTCCACTATCAAGGCTTTGAGTAATGTCTTAAA
TAAAATCCCTATTGTGGGCTATCTTGTCTTAGGAAAAGGAGGTAAAATCACCACTAATGTGAATGTCAAAGGCACGCTGG
ATAACCCTAAAACCAAAGTAACTTTAGCAGCAGATATTATCCAAGCGCCTTTTAAAATCTTGCGCCGTATTTTCACGCCC
ATTGACATCATCGTGGATGAAGTCAAAAAAAATATTGATTCAAAAAGGAAGTAA

Upstream 100 bases:

>100_bases
TTGCTCTTTTAAAGAAAAAAACACTTTTTTGAGCGAACCTTGCGGGACAACCACCACTTTGTTAGGATAAATTGGTATAC
TTAAATAAAAAAGAACGCTG

Downstream 100 bases:

>100_bases
AATGACGCTCAATGAAGCCATTAAAGACAAAGTTTATGAAATCGTAGAAATCGCTAACTGCGATGAAGCCCTTAAGAAAC
GCTTTCTGTCTTTTGGTATC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 977; Mature: 977

Protein sequence:

>977_residues
MNKRRNISKKVFNVIILFVAVFTLLFVIHKTLSNGIHIQNLKIGKLGISELYLKLNNKLSLEVERVDLSAFFHQKPTKKR
LEVSDLIKNIRYGIWAVSYFEKLKVKEIILDDKNKANIFFDGNKYELEFPGVKGEFSLEDDKNIKLKIINLLFKDIKVQV
DGNAHYSPKARKMAFNLIVKPLIEPSAAIYLQGLTDLKTIELKINTSPMKSLAFLKPLFQRQSQKNLKTWIFDKIQFASF
KIDNASIKANFTPSEFIPSLLENSVVKATLIKPSVVFNDGLSPIKMDKTELIFKNKQLLIQPQKITYETMELNGSYATFS
NLLEAPKLEVFLKTTPNYYGDSIKDLLSAYKVVLPLDKISTPSSADLKLTLQFLKNTAPLFSVQGNVNLQEGTLSLYNIP
LYTQNASVNLDITQEYQYIYIETTHTRYENMLDLDAKIALDLNKKTLSLDSLVHKIRFNTNNNINMRSYGLNNDPDNPQP
TKFSLDLKSLHSIIQESENSEAFRRKIIDTIKAQSEDKFTKDVFYATEDTLKNLSLNFDFSNPSHMQWSVPQLLLEGEFK
DNAYVFRIKDLKKIKPYSPIMKYFALEDGSLEVSTSDFVNIDFFAKDLKITLPIYHSNGMQFNSLSLFGSINKDEISVYT
PSKSISIKVRGDQKDITLNNIDLSIDDFLDSKMPAIAGLFSKERKEKPSSKEIQDEDIFISAKQRYEKAHKIIPISTRIH
AKDVVLIYKKMPFPLENLDIVAQDDRVKIDGNYKNGMIMADLVHGALYLKAHNFSGDYINTILQKDFVEGGLFTLIGALE
DQVFNGELKFQNTSLKNFALMQNMVNLINTIPSLIVFRNPHLGANGYQIKKGSVVFGITKEYLGLEKIDLIGKTLDIAGN
GIIELDKNKLDLNLEVSTIKALSNVLNKIPIVGYLVLGKGGKITTNVNVKGTLDNPKTKVTLAADIIQAPFKILRRIFTP
IDIIVDEVKKNIDSKRK

Sequences:

>Translated_977_residues
MNKRRNISKKVFNVIILFVAVFTLLFVIHKTLSNGIHIQNLKIGKLGISELYLKLNNKLSLEVERVDLSAFFHQKPTKKR
LEVSDLIKNIRYGIWAVSYFEKLKVKEIILDDKNKANIFFDGNKYELEFPGVKGEFSLEDDKNIKLKIINLLFKDIKVQV
DGNAHYSPKARKMAFNLIVKPLIEPSAAIYLQGLTDLKTIELKINTSPMKSLAFLKPLFQRQSQKNLKTWIFDKIQFASF
KIDNASIKANFTPSEFIPSLLENSVVKATLIKPSVVFNDGLSPIKMDKTELIFKNKQLLIQPQKITYETMELNGSYATFS
NLLEAPKLEVFLKTTPNYYGDSIKDLLSAYKVVLPLDKISTPSSADLKLTLQFLKNTAPLFSVQGNVNLQEGTLSLYNIP
LYTQNASVNLDITQEYQYIYIETTHTRYENMLDLDAKIALDLNKKTLSLDSLVHKIRFNTNNNINMRSYGLNNDPDNPQP
TKFSLDLKSLHSIIQESENSEAFRRKIIDTIKAQSEDKFTKDVFYATEDTLKNLSLNFDFSNPSHMQWSVPQLLLEGEFK
DNAYVFRIKDLKKIKPYSPIMKYFALEDGSLEVSTSDFVNIDFFAKDLKITLPIYHSNGMQFNSLSLFGSINKDEISVYT
PSKSISIKVRGDQKDITLNNIDLSIDDFLDSKMPAIAGLFSKERKEKPSSKEIQDEDIFISAKQRYEKAHKIIPISTRIH
AKDVVLIYKKMPFPLENLDIVAQDDRVKIDGNYKNGMIMADLVHGALYLKAHNFSGDYINTILQKDFVEGGLFTLIGALE
DQVFNGELKFQNTSLKNFALMQNMVNLINTIPSLIVFRNPHLGANGYQIKKGSVVFGITKEYLGLEKIDLIGKTLDIAGN
GIIELDKNKLDLNLEVSTIKALSNVLNKIPIVGYLVLGKGGKITTNVNVKGTLDNPKTKVTLAADIIQAPFKILRRIFTP
IDIIVDEVKKNIDSKRK
>Mature_977_residues
MNKRRNISKKVFNVIILFVAVFTLLFVIHKTLSNGIHIQNLKIGKLGISELYLKLNNKLSLEVERVDLSAFFHQKPTKKR
LEVSDLIKNIRYGIWAVSYFEKLKVKEIILDDKNKANIFFDGNKYELEFPGVKGEFSLEDDKNIKLKIINLLFKDIKVQV
DGNAHYSPKARKMAFNLIVKPLIEPSAAIYLQGLTDLKTIELKINTSPMKSLAFLKPLFQRQSQKNLKTWIFDKIQFASF
KIDNASIKANFTPSEFIPSLLENSVVKATLIKPSVVFNDGLSPIKMDKTELIFKNKQLLIQPQKITYETMELNGSYATFS
NLLEAPKLEVFLKTTPNYYGDSIKDLLSAYKVVLPLDKISTPSSADLKLTLQFLKNTAPLFSVQGNVNLQEGTLSLYNIP
LYTQNASVNLDITQEYQYIYIETTHTRYENMLDLDAKIALDLNKKTLSLDSLVHKIRFNTNNNINMRSYGLNNDPDNPQP
TKFSLDLKSLHSIIQESENSEAFRRKIIDTIKAQSEDKFTKDVFYATEDTLKNLSLNFDFSNPSHMQWSVPQLLLEGEFK
DNAYVFRIKDLKKIKPYSPIMKYFALEDGSLEVSTSDFVNIDFFAKDLKITLPIYHSNGMQFNSLSLFGSINKDEISVYT
PSKSISIKVRGDQKDITLNNIDLSIDDFLDSKMPAIAGLFSKERKEKPSSKEIQDEDIFISAKQRYEKAHKIIPISTRIH
AKDVVLIYKKMPFPLENLDIVAQDDRVKIDGNYKNGMIMADLVHGALYLKAHNFSGDYINTILQKDFVEGGLFTLIGALE
DQVFNGELKFQNTSLKNFALMQNMVNLINTIPSLIVFRNPHLGANGYQIKKGSVVFGITKEYLGLEKIDLIGKTLDIAGN
GIIELDKNKLDLNLEVSTIKALSNVLNKIPIVGYLVLGKGGKITTNVNVKGTLDNPKTKVTLAADIIQAPFKILRRIFTP
IDIIVDEVKKNIDSKRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 110932; Mature: 110932

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKRRNISKKVFNVIILFVAVFTLLFVIHKTLSNGIHIQNLKIGKLGISELYLKLNNKLS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHEEECCEEE
LEVERVDLSAFFHQKPTKKRLEVSDLIKNIRYGIWAVSYFEKLKVKEIILDDKNKANIFF
EEEEEEEHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCEEEEE
DGNKYELEFPGVKGEFSLEDDKNIKLKIINLLFKDIKVQVDGNAHYSPKARKMAFNLIVK
CCCEEEEECCCCCCEEECCCCCCCEEEEEEEEHEEEEEEECCCCCCCCHHHHHHHHHHHH
PLIEPSAAIYLQGLTDLKTIELKINTSPMKSLAFLKPLFQRQSQKNLKTWIFDKIQFASF
HHCCCCCEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHCEEEEEE
KIDNASIKANFTPSEFIPSLLENSVVKATLIKPSVVFNDGLSPIKMDKTELIFKNKQLLI
EECCCEEEECCCHHHHHHHHHCCCCEEEEEECCEEEECCCCCCEECCCEEEEEECCEEEE
QPQKITYETMELNGSYATFSNLLEAPKLEVFLKTTPNYYGDSIKDLLSAYKVVLPLDKIS
ECCCEEEEEEEECCCHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHEEEEEHHHCC
TPSSADLKLTLQFLKNTAPLFSVQGNVNLQEGTLSLYNIPLYTQNASVNLDITQEYQYIY
CCCCCCCEEEEEHHHCCCCEEEECCCCEEECCEEEEEEEEEEECCCEEEEEEECCEEEEE
IETTHTRYENMLDLDAKIALDLNKKTLSLDSLVHKIRFNTNNNINMRSYGLNNDPDNPQP
EEECCCHHHHHHCCCEEEEEECCCCEEEHHHHHHHEEECCCCCEEEEECCCCCCCCCCCC
TKFSLDLKSLHSIIQESENSEAFRRKIIDTIKAQSEDKFTKDVFYATEDTLKNLSLNFDF
CEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHEEECHHHHHCEEEEEEC
SNPSHMQWSVPQLLLEGEFKDNAYVFRIKDLKKIKPYSPIMKYFALEDGSLEVSTSDFVN
CCCCCCEECCCHHEEECCCCCCEEEEEECCCCCCCCHHHHHHHHEECCCCEEEECCCEEE
IDFFAKDLKITLPIYHSNGMQFNSLSLFGSINKDEISVYTPSKSISIKVRGDQKDITLNN
EEEEEECEEEEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCEEEEEEECCCCCEEEEE
IDLSIDDFLDSKMPAIAGLFSKERKEKPSSKEIQDEDIFISAKQRYEKAHKIIPISTRIH
EEEEHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHCEEEEECEEE
AKDVVLIYKKMPFPLENLDIVAQDDRVKIDGNYKNGMIMADLVHGALYLKAHNFSGDYIN
CCEEEEEEECCCCCCCCCEEEEECCEEEECCCCCCCEEEEEECCCEEEEEEECCCCHHHH
TILQKDFVEGGLFTLIGALEDQVFNGELKFQNTSLKNFALMQNMVNLINTIPSLIVFRNP
HHHHHHHHCCCHHHHHHHHHHHEECCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECC
HLGANGYQIKKGSVVFGITKEYLGLEKIDLIGKTLDIAGNGIIELDKNKLDLNLEVSTIK
CCCCCCEEEECCCEEEEECHHHCCCHHHHHHCCEEEECCCCEEEECCCEEEEEEEHHHHH
ALSNVLNKIPIVGYLVLGKGGKITTNVNVKGTLDNPKTKVTLAADIIQAPFKILRRIFTP
HHHHHHHCCCEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCH
IDIIVDEVKKNIDSKRK
HHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNKRRNISKKVFNVIILFVAVFTLLFVIHKTLSNGIHIQNLKIGKLGISELYLKLNNKLS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHEEECCEEE
LEVERVDLSAFFHQKPTKKRLEVSDLIKNIRYGIWAVSYFEKLKVKEIILDDKNKANIFF
EEEEEEEHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCEEEEE
DGNKYELEFPGVKGEFSLEDDKNIKLKIINLLFKDIKVQVDGNAHYSPKARKMAFNLIVK
CCCEEEEECCCCCCEEECCCCCCCEEEEEEEEHEEEEEEECCCCCCCCHHHHHHHHHHHH
PLIEPSAAIYLQGLTDLKTIELKINTSPMKSLAFLKPLFQRQSQKNLKTWIFDKIQFASF
HHCCCCCEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHCEEEEEE
KIDNASIKANFTPSEFIPSLLENSVVKATLIKPSVVFNDGLSPIKMDKTELIFKNKQLLI
EECCCEEEECCCHHHHHHHHHCCCCEEEEEECCEEEECCCCCCEECCCEEEEEECCEEEE
QPQKITYETMELNGSYATFSNLLEAPKLEVFLKTTPNYYGDSIKDLLSAYKVVLPLDKIS
ECCCEEEEEEEECCCHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHEEEEEHHHCC
TPSSADLKLTLQFLKNTAPLFSVQGNVNLQEGTLSLYNIPLYTQNASVNLDITQEYQYIY
CCCCCCCEEEEEHHHCCCCEEEECCCCEEECCEEEEEEEEEEECCCEEEEEEECCEEEEE
IETTHTRYENMLDLDAKIALDLNKKTLSLDSLVHKIRFNTNNNINMRSYGLNNDPDNPQP
EEECCCHHHHHHCCCEEEEEECCCCEEEHHHHHHHEEECCCCCEEEEECCCCCCCCCCCC
TKFSLDLKSLHSIIQESENSEAFRRKIIDTIKAQSEDKFTKDVFYATEDTLKNLSLNFDF
CEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHEEECHHHHHCEEEEEEC
SNPSHMQWSVPQLLLEGEFKDNAYVFRIKDLKKIKPYSPIMKYFALEDGSLEVSTSDFVN
CCCCCCEECCCHHEEECCCCCCEEEEEECCCCCCCCHHHHHHHHEECCCCEEEECCCEEE
IDFFAKDLKITLPIYHSNGMQFNSLSLFGSINKDEISVYTPSKSISIKVRGDQKDITLNN
EEEEEECEEEEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCEEEEEEECCCCCEEEEE
IDLSIDDFLDSKMPAIAGLFSKERKEKPSSKEIQDEDIFISAKQRYEKAHKIIPISTRIH
EEEEHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHCEEEEECEEE
AKDVVLIYKKMPFPLENLDIVAQDDRVKIDGNYKNGMIMADLVHGALYLKAHNFSGDYIN
CCEEEEEEECCCCCCCCCEEEEECCEEEECCCCCCCEEEEEECCCEEEEEEECCCCHHHH
TILQKDFVEGGLFTLIGALEDQVFNGELKFQNTSLKNFALMQNMVNLINTIPSLIVFRNP
HHHHHHHHCCCHHHHHHHHHHHEECCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECC
HLGANGYQIKKGSVVFGITKEYLGLEKIDLIGKTLDIAGNGIIELDKNKLDLNLEVSTIK
CCCCCCEEEECCCEEEEECHHHCCCHHHHHHCCEEEECCCCEEEECCCEEEEEEEHHHHH
ALSNVLNKIPIVGYLVLGKGGKITTNVNVKGTLDNPKTKVTLAADIIQAPFKILRRIFTP
HHHHHHHCCCEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCH
IDIIVDEVKKNIDSKRK
HHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA