| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527345
Identifier: 188527345
GI number: 188527345
Start: 531690
End: 532082
Strand: Direct
Name: 188527345
Synonym: HPSH_02760
Alternate gene names: NA
Gene position: 531690-532082 (Clockwise)
Preceding gene: 188527344
Following gene: 188527346
Centisome position: 33.05
GC content: 33.59
Gene sequence:
>393_bases TTGGCGCTTAAAAGAAAGAATTGCTATAATTTGAAACAATTTATTGATTGGGATAAAAGGGATTTTTTGAAAATTTTTCT TTCTTGCAAGTCTTTGTTGATTCAAAGGAGTTTGGAATTTTGTTTGAGCGATTGCCTCTCTCCTATGGAAGTTTGTGATC TTGTTTTAAGCGATGATGGAAAGCTAGAAACCAATAAGCCCCTATGCTTTATAGAAGAGCGCTTAAGAAAGCCTTTCACT AAACAGAGCGTGAAAGAAGATATAAAAAATTTTTATCACGCTTTAAAAGAGAGCGAAAAACCTTGCGAAGAAATCCAATT TTCTAAAGAGCAAAAGATCCAGCAATTACTAGAAGAATACACCCAAAAATTATGCCAAATCATCAGCCAGTAA
Upstream 100 bases:
>100_bases CCGAGCATTATACCAAAAAAAAAAAAAACGATGTTATTTGAACTCTATTTTTAACATTCTTTTTAACTTTTTTACAAAAT GAGAATTTATTTATTTAGTA
Downstream 100 bases:
>100_bases AAAAATTTAAGATTATTGGGGGGGCCTGTAAGGGATTGGGCTTGAATTTGCCCAAAATTTCTAGCACGCGCCCCACAAAA GCGATCGTAAGAGAGTCGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 130; Mature: 129
Protein sequence:
>130_residues MALKRKNCYNLKQFIDWDKRDFLKIFLSCKSLLIQRSLEFCLSDCLSPMEVCDLVLSDDGKLETNKPLCFIEERLRKPFT KQSVKEDIKNFYHALKESEKPCEEIQFSKEQKIQQLLEEYTQKLCQIISQ
Sequences:
>Translated_130_residues MALKRKNCYNLKQFIDWDKRDFLKIFLSCKSLLIQRSLEFCLSDCLSPMEVCDLVLSDDGKLETNKPLCFIEERLRKPFT KQSVKEDIKNFYHALKESEKPCEEIQFSKEQKIQQLLEEYTQKLCQIISQ >Mature_129_residues ALKRKNCYNLKQFIDWDKRDFLKIFLSCKSLLIQRSLEFCLSDCLSPMEVCDLVLSDDGKLETNKPLCFIEERLRKPFTK QSVKEDIKNFYHALKESEKPCEEIQFSKEQKIQQLLEEYTQKLCQIISQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15507; Mature: 15376
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 7.7 %Cys+Met (Translated Protein) 6.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 7.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALKRKNCYNLKQFIDWDKRDFLKIFLSCKSLLIQRSLEFCLSDCLSPMEVCDLVLSDDG CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC KLETNKPLCFIEERLRKPFTKQSVKEDIKNFYHALKESEKPCEEIQFSKEQKIQQLLEEY CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHH TQKLCQIISQ HHHHHHHHCC >Mature Secondary Structure ALKRKNCYNLKQFIDWDKRDFLKIFLSCKSLLIQRSLEFCLSDCLSPMEVCDLVLSDDG CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC KLETNKPLCFIEERLRKPFTKQSVKEDIKNFYHALKESEKPCEEIQFSKEQKIQQLLEEY CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHH TQKLCQIISQ HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA