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The map label for this gene is 188527331

Identifier: 188527331

GI number: 188527331

Start: 520259

End: 520603

Strand: Reverse

Name: 188527331

Synonym: HPSH_02690

Alternate gene names: NA

Gene position: 520603-520259 (Counterclockwise)

Preceding gene: 188527332

Following gene: 188527330

Centisome position: 32.36

GC content: 34.78

Gene sequence:

>345_bases
ATGCGCTTTTTGAACAACAAGCATAGGGCAAAGGGCTTAAAGGCTGAAGAAGAAGCTTGCGAATTTTTAAAAACGCTGGG
TTTTGAAATGGTGGAGAGGAACTTTTTTTCAAAATTTGGCGAAATTGATATTATCGCTTTGAAAAAAGGGGTTTTGCATT
TCATTGAAGTCAAAAGCGGGGAAAATTTTGATCCCATTTATGCGATCACGCCAAGCAAATTAAAAAAGATGATTAAAACG
ATCCGCTGTTATTTTTCCCAAAAAGATCCCAATAGCGATTTTTGCATTGACGCTCTTATTGTGAAAAATGGTAAATTTGA
GCTTTTAGAAAATATCACTTTTTAG

Upstream 100 bases:

>100_bases
GCACACCACCAACGAAAAGTCTATGTTAAACGCCCTTAAAGAGCTTGAAAATCTAAAAAGCGTGCTAGACACCCCTAAAA
TGATCCGTTTGGAACATTGA

Downstream 100 bases:

>100_bases
ATTTTTATCCAAAATCAATGCGTTTTCATTAACATTCTTAAGCTAATATACTTCTCGTTAATCAAAATCATATATTTAGG
AGTAACCAATGAGTCACTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MRFLNNKHRAKGLKAEEEACEFLKTLGFEMVERNFFSKFGEIDIIALKKGVLHFIEVKSGENFDPIYAITPSKLKKMIKT
IRCYFSQKDPNSDFCIDALIVKNGKFELLENITF

Sequences:

>Translated_114_residues
MRFLNNKHRAKGLKAEEEACEFLKTLGFEMVERNFFSKFGEIDIIALKKGVLHFIEVKSGENFDPIYAITPSKLKKMIKT
IRCYFSQKDPNSDFCIDALIVKNGKFELLENITF
>Mature_114_residues
MRFLNNKHRAKGLKAEEEACEFLKTLGFEMVERNFFSKFGEIDIIALKKGVLHFIEVKSGENFDPIYAITPSKLKKMIKT
IRCYFSQKDPNSDFCIDALIVKNGKFELLENITF

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2690_HELPS (B2UT06)

Other databases:

- EMBL:   CP001072
- RefSeq:   YP_001910018.1
- GeneID:   6296464
- GenomeReviews:   CP001072_GR
- KEGG:   hps:HPSH_02690
- HOGENOM:   HBG710155
- OMA:   YPICNIT
- ProtClustDB:   PRK12497
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 13231; Mature: 13231

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFLNNKHRAKGLKAEEEACEFLKTLGFEMVERNFFSKFGEIDIIALKKGVLHFIEVKSG
CCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHEEEEEECCC
ENFDPIYAITPSKLKKMIKTIRCYFSQKDPNSDFCIDALIVKNGKFELLENITF
CCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHCCCC
>Mature Secondary Structure
MRFLNNKHRAKGLKAEEEACEFLKTLGFEMVERNFFSKFGEIDIIALKKGVLHFIEVKSG
CCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHEEEEEECCC
ENFDPIYAITPSKLKKMIKTIRCYFSQKDPNSDFCIDALIVKNGKFELLENITF
CCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA