| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is gltX
Identifier: 188527262
GI number: 188527262
Start: 449951
End: 451342
Strand: Reverse
Name: gltX
Synonym: HPSH_02345
Alternate gene names: 188527262
Gene position: 451342-449951 (Counterclockwise)
Preceding gene: 188527271
Following gene: 188527258
Centisome position: 28.06
GC content: 39.37
Gene sequence:
>1392_bases ATGAGTTTGATCGTTACGCGCTTCGCTCCATCGCCCACCGGCTATCTCCACATAGGAGGCTTAAGAACAGCCATTTTCAA TTATCTTTTTGCACGAGCCAATCAAGGAAAATTTTTTTTACGCATTGAAGACACGGATTTGAGCCGTAACTCTATAGAAG CGGCTAACGCCATTATAGAGGCTTTCAAATGGGTAGGGCTAGAACACGATGGAGAAATCCTCTACCAATCCAAACGCTTT GGAATTTATAAAGAATATATCCAGAAACTCTTAGATGAAGACAAAGCCTATTACTGCTACATGAGTAAAGATGAGTTGGA CGCTTTGAGAGAAGAACAAAAGGCCAGGAAAGAAACCCCACGCTATGACAATCGTTATCGTGATTTTAAAGGCACGCCCC CTAAAGGCATAGAGCCTGTGGTAAGGATTAAAGTCCCGCAAAATGAAATCATTGGTTTTAATGACGGGGTTAAAGGCGAA GTGAAAGTGAATACTAACGAATTAGACGATTTTATTATCGCTAGGAGCGATGGAACGCCCACTTATAACTTTGTGGTTAC CATTGATGACGCTTTAATGGGGATTACTGACGTGATTAGAGGCGATGATCACCTTTCTAACACCCCTAAACAAATCGTTC TCTATAAGGCTTTAAATTTTAAAATCCCTAATTTTTTCCATGTGCCGATGATTTTGAATGAAGAAGGGCAAAAATTAAGC AAACGCCATGGGGCCACTAATGTGATGGACTATCAAGAAATGGGCTATCTTAAGGAAGCGTTAGTGAATTTTTTAGCGCG TTTGGGGTGGAGCTGTCACGATAAAGAGGTTTTTAGCATGCAAGAATTACTAAAATGGTTTGACCCTAAAGATTTAAATT CTTCGCCCAGTTGCTTTAGCTGGCACAAGCTTAATTGGCTCAACGCTCATTATTTAAAAAACCAAAGCGCGCAAAGATTG TTAGAGCTTTTAAAGCCTTTTAATTTTAGCGATCTCTCGCATTTAAACCCCACCCAATTGGATCGCTTGTTAGACGCTCT CAAAGAAAGATCTCAAACCTTAAAAGAATTAGCCCTTAAAATAGATGAGGTTTTAATCGCTCCTGTAGAGTATGAAGAAA AGGTTTTTAAAAAGCTCAATCAAGCGCTCGTTATGCCCTTGTTAGAAAAGTTTAAACTAGAATTGAATAAAGCCAATTTC AACGATGAAAGCGTGCTAGAAAACGCCATGCACAAAATCATTGAAGAAGAAAAGATTAAAGCGGGTAGTTTTATGCAGCC TTTAAGATTAGCCCTTTTGGGTAAGGGGGGCGGGATAGGCCTTAAAGAAGCGCTTTTCATTTTAGGCAAAACAGAGAGCG TTAAAAGAATAGAAGAATTTTTGAAAAACTAA
Upstream 100 bases:
>100_bases AATAATCTCAATCATACACTAATTTTAATAGAAAAAAGTGAAACCATTTTTAAGCCATTTTTGAATACAATAAGGGTATT TTATTTTTAAGGTTAGAATA
Downstream 100 bases:
>100_bases AAGATTGGCTCTCTAAAATGGGCGCATAAAGTTTGCATTTTTGAAAAATAAGAGGGTTTTAAGAGAAAAATAAAAGTATT TCTAAAATTTTTTGCCCTGA
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase 1; GluRS 1 [H]
Number of amino acids: Translated: 463; Mature: 462
Protein sequence:
>463_residues MSLIVTRFAPSPTGYLHIGGLRTAIFNYLFARANQGKFFLRIEDTDLSRNSIEAANAIIEAFKWVGLEHDGEILYQSKRF GIYKEYIQKLLDEDKAYYCYMSKDELDALREEQKARKETPRYDNRYRDFKGTPPKGIEPVVRIKVPQNEIIGFNDGVKGE VKVNTNELDDFIIARSDGTPTYNFVVTIDDALMGITDVIRGDDHLSNTPKQIVLYKALNFKIPNFFHVPMILNEEGQKLS KRHGATNVMDYQEMGYLKEALVNFLARLGWSCHDKEVFSMQELLKWFDPKDLNSSPSCFSWHKLNWLNAHYLKNQSAQRL LELLKPFNFSDLSHLNPTQLDRLLDALKERSQTLKELALKIDEVLIAPVEYEEKVFKKLNQALVMPLLEKFKLELNKANF NDESVLENAMHKIIEEEKIKAGSFMQPLRLALLGKGGGIGLKEALFILGKTESVKRIEEFLKN
Sequences:
>Translated_463_residues MSLIVTRFAPSPTGYLHIGGLRTAIFNYLFARANQGKFFLRIEDTDLSRNSIEAANAIIEAFKWVGLEHDGEILYQSKRF GIYKEYIQKLLDEDKAYYCYMSKDELDALREEQKARKETPRYDNRYRDFKGTPPKGIEPVVRIKVPQNEIIGFNDGVKGE VKVNTNELDDFIIARSDGTPTYNFVVTIDDALMGITDVIRGDDHLSNTPKQIVLYKALNFKIPNFFHVPMILNEEGQKLS KRHGATNVMDYQEMGYLKEALVNFLARLGWSCHDKEVFSMQELLKWFDPKDLNSSPSCFSWHKLNWLNAHYLKNQSAQRL LELLKPFNFSDLSHLNPTQLDRLLDALKERSQTLKELALKIDEVLIAPVEYEEKVFKKLNQALVMPLLEKFKLELNKANF NDESVLENAMHKIIEEEKIKAGSFMQPLRLALLGKGGGIGLKEALFILGKTESVKRIEEFLKN >Mature_462_residues SLIVTRFAPSPTGYLHIGGLRTAIFNYLFARANQGKFFLRIEDTDLSRNSIEAANAIIEAFKWVGLEHDGEILYQSKRFG IYKEYIQKLLDEDKAYYCYMSKDELDALREEQKARKETPRYDNRYRDFKGTPPKGIEPVVRIKVPQNEIIGFNDGVKGEV KVNTNELDDFIIARSDGTPTYNFVVTIDDALMGITDVIRGDDHLSNTPKQIVLYKALNFKIPNFFHVPMILNEEGQKLSK RHGATNVMDYQEMGYLKEALVNFLARLGWSCHDKEVFSMQELLKWFDPKDLNSSPSCFSWHKLNWLNAHYLKNQSAQRLL ELLKPFNFSDLSHLNPTQLDRLLDALKERSQTLKELALKIDEVLIAPVEYEEKVFKKLNQALVMPLLEKFKLELNKANFN DESVLENAMHKIIEEEKIKAGSFMQPLRLALLGKGGGIGLKEALFILGKTESVKRIEEFLKN
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) [H]
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=494, Percent_Identity=30.1619433198381, Blast_Score=216, Evalue=3e-56, Organism=Homo sapiens, GI62241042, Length=436, Percent_Identity=22.4770642201835, Blast_Score=70, Evalue=6e-12, Organism=Escherichia coli, GI1788743, Length=459, Percent_Identity=42.483660130719, Blast_Score=363, Evalue=1e-101, Organism=Escherichia coli, GI226510925, Length=242, Percent_Identity=35.9504132231405, Blast_Score=162, Evalue=4e-41, Organism=Escherichia coli, GI1786895, Length=213, Percent_Identity=25.8215962441315, Blast_Score=69, Evalue=6e-13, Organism=Caenorhabditis elegans, GI71993394, Length=302, Percent_Identity=39.4039735099338, Blast_Score=191, Evalue=8e-49, Organism=Caenorhabditis elegans, GI17511007, Length=258, Percent_Identity=23.6434108527132, Blast_Score=76, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6324540, Length=489, Percent_Identity=33.9468302658487, Blast_Score=223, Evalue=4e-59, Organism=Saccharomyces cerevisiae, GI6321192, Length=218, Percent_Identity=28.8990825688073, Blast_Score=87, Evalue=5e-18, Organism=Saccharomyces cerevisiae, GI6324742, Length=128, Percent_Identity=29.6875, Blast_Score=66, Evalue=9e-12, Organism=Drosophila melanogaster, GI24665321, Length=491, Percent_Identity=33.1975560081466, Blast_Score=237, Evalue=1e-62, Organism=Drosophila melanogaster, GI24649466, Length=250, Percent_Identity=26, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI17864488, Length=363, Percent_Identity=24.2424242424242, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: =6.1.1.17 [H]
Molecular weight: Translated: 53325; Mature: 53194
Theoretical pI: Translated: 7.07; Mature: 7.07
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLIVTRFAPSPTGYLHIGGLRTAIFNYLFARANQGKFFLRIEDTDLSRNSIEAANAIIE CCEEEEECCCCCCCEEEECHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH AFKWVGLEHDGEILYQSKRFGIYKEYIQKLLDEDKAYYCYMSKDELDALREEQKARKETP HHHHCCCCCCCCEEEECHHCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCC RYDNRYRDFKGTPPKGIEPVVRIKVPQNEIIGFNDGVKGEVKVNTNELDDFIIARSDGTP CCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCEEEEECCCCCCCEEEEECCCCC TYNFVVTIDDALMGITDVIRGDDHLSNTPKQIVLYKALNFKIPNFFHVPMILNEEGQKLS EEEEEEEECHHHHHHHHHHCCCCCCCCCCHHEEEEEECCCCCCCEEECCEEECCCHHHHH KRHGATNVMDYQEMGYLKEALVNFLARLGWSCHDKEVFSMQELLKWFDPKDLNSSPSCFS HHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCE WHKLNWLNAHYLKNQSAQRLLELLKPFNFSDLSHLNPTQLDRLLDALKERSQTLKELALK ECCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH IDEVLIAPVEYEEKVFKKLNQALVMPLLEKFKLELNKANFNDESVLENAMHKIIEEEKIK HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC AGSFMQPLRLALLGKGGGIGLKEALFILGKTESVKRIEEFLKN CCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCC >Mature Secondary Structure SLIVTRFAPSPTGYLHIGGLRTAIFNYLFARANQGKFFLRIEDTDLSRNSIEAANAIIE CEEEEECCCCCCCEEEECHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH AFKWVGLEHDGEILYQSKRFGIYKEYIQKLLDEDKAYYCYMSKDELDALREEQKARKETP HHHHCCCCCCCCEEEECHHCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCC RYDNRYRDFKGTPPKGIEPVVRIKVPQNEIIGFNDGVKGEVKVNTNELDDFIIARSDGTP CCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCEEEEECCCCCCCEEEEECCCCC TYNFVVTIDDALMGITDVIRGDDHLSNTPKQIVLYKALNFKIPNFFHVPMILNEEGQKLS EEEEEEEECHHHHHHHHHHCCCCCCCCCCHHEEEEEECCCCCCCEEECCEEECCCHHHHH KRHGATNVMDYQEMGYLKEALVNFLARLGWSCHDKEVFSMQELLKWFDPKDLNSSPSCFS HHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCE WHKLNWLNAHYLKNQSAQRLLELLKPFNFSDLSHLNPTQLDRLLDALKERSQTLKELALK ECCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH IDEVLIAPVEYEEKVFKKLNQALVMPLLEKFKLELNKANFNDESVLENAMHKIIEEEKIK HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC AGSFMQPLRLALLGKGGGIGLKEALFILGKTESVKRIEEFLKN CCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA