| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is hcpE [H]
Identifier: 188527042
GI number: 188527042
Start: 229851
End: 230918
Strand: Reverse
Name: hcpE [H]
Synonym: HPSH_01225
Alternate gene names: 188527042
Gene position: 230918-229851 (Counterclockwise)
Preceding gene: 188527043
Following gene: 188527036
Centisome position: 14.36
GC content: 41.1
Gene sequence:
>1068_bases ATGAGTGTCAAAATTTTAAAAATATTAGTTTGTGGGTTATTTTTTTGGAGCTTGCAAGCCCATTTATGGGGGAAAAAAGA CAAGAGCTTTTTAGGGGTTGCTGAAAGGGCCTATAAAAGCGGGAATTATTCTAAAGCTGCATCTTATTTTAAAAAAGCAT GCAACGATGGGGTGAGTGAAGGTTGCACGCAATTAGGAATCATTTATGAAAACGGGCAAGGCACTAAAATAGATTATAAA AAAGCCCTAGAATATTACCAAAGCGCATGCCAGGGTGATGATAGGGAAGGGTGTTTTGGTTTAGGGGGGCTTTATGATGA GGGGTTAGGCACGACTCAAAATTATCAAGAGGCCATTGACGCTTATGCTAATGCGTGCGTTTTAAAACACCCTGAGAGTT GCTACAATTTAGGCATTATTTATGACCGAAAAATCAAAGGCAATGCCGCTCAAGCGGTTACCTACTATCAAAAAAGCTGC AATTTTGATATGGCTAAGGGGTGTTATGTTTTGGGCGTGGCTTATGAAAAAGGCTTTTTAGAAGTCAAACAAAGCAACCA TAAAGCCGTGATTTATTATTTGAAAGCGTGCCGATTGAATGATGGGCAGGCTTGTCGCGCGTTAGGGAGTTTGTTTGAAA ATGGCGATGCAGGGCTTGATGAAGATTTTGAAGTGGCGTTTGATTATTTGCAAAAAGCTTGCGGATTAAATAATTCTGGT GGTTGCGCGAGTTTAGGCTCTATGTATATGTTAGGCAGGTATGTCAAAAAAGATCCCCAAAAGGCTTTTAATTTTTTCAA ACAAGCATGCGATATGGGGAGTGCGGTGAGTTGCTCTAGGATGGGCTTTATGTATTCCCAAGGGGACGCTGTTCCAAAAG ACTTGAGGAAAGCCCTTGATAATTATGAAAGGGGTTGCGATATGGGCGATGAAGTGGGTTGCTTCGCTCTAGCGGGCATG TATTACAACATGAAAGATAAAGAAAACGCCATAATGATTTATGACAAGGGCTGTAAGCTGGGCATGAAACAAGCATGCGA AAACCTCACTAAACTTAGGGGGTATTGA
Upstream 100 bases:
>100_bases GCCTTAATCAAAGCGCTTGATTTATGTTAAAATGGGGTGTTGCATTTTTTGTTTTGATTGAAGAGGGTTCTAAAAATCAG AATTTATAAAGAAGGTAAGA
Downstream 100 bases:
>100_bases AAAATTTAAAACCACCCAAGCAGAAAACCCAAACGCCTTTAGCGTTTGTGATGAATGCTACTAGTCTATAATATTGCGTT CGTATCTAGGACAAAGGAGT
Product: cysteine-rich protein E
Products: NA
Alternate protein names: Cysteine-rich protein E [H]
Number of amino acids: Translated: 355; Mature: 354
Protein sequence:
>355_residues MSVKILKILVCGLFFWSLQAHLWGKKDKSFLGVAERAYKSGNYSKAASYFKKACNDGVSEGCTQLGIIYENGQGTKIDYK KALEYYQSACQGDDREGCFGLGGLYDEGLGTTQNYQEAIDAYANACVLKHPESCYNLGIIYDRKIKGNAAQAVTYYQKSC NFDMAKGCYVLGVAYEKGFLEVKQSNHKAVIYYLKACRLNDGQACRALGSLFENGDAGLDEDFEVAFDYLQKACGLNNSG GCASLGSMYMLGRYVKKDPQKAFNFFKQACDMGSAVSCSRMGFMYSQGDAVPKDLRKALDNYERGCDMGDEVGCFALAGM YYNMKDKENAIMIYDKGCKLGMKQACENLTKLRGY
Sequences:
>Translated_355_residues MSVKILKILVCGLFFWSLQAHLWGKKDKSFLGVAERAYKSGNYSKAASYFKKACNDGVSEGCTQLGIIYENGQGTKIDYK KALEYYQSACQGDDREGCFGLGGLYDEGLGTTQNYQEAIDAYANACVLKHPESCYNLGIIYDRKIKGNAAQAVTYYQKSC NFDMAKGCYVLGVAYEKGFLEVKQSNHKAVIYYLKACRLNDGQACRALGSLFENGDAGLDEDFEVAFDYLQKACGLNNSG GCASLGSMYMLGRYVKKDPQKAFNFFKQACDMGSAVSCSRMGFMYSQGDAVPKDLRKALDNYERGCDMGDEVGCFALAGM YYNMKDKENAIMIYDKGCKLGMKQACENLTKLRGY >Mature_354_residues SVKILKILVCGLFFWSLQAHLWGKKDKSFLGVAERAYKSGNYSKAASYFKKACNDGVSEGCTQLGIIYENGQGTKIDYKK ALEYYQSACQGDDREGCFGLGGLYDEGLGTTQNYQEAIDAYANACVLKHPESCYNLGIIYDRKIKGNAAQAVTYYQKSCN FDMAKGCYVLGVAYEKGFLEVKQSNHKAVIYYLKACRLNDGQACRALGSLFENGDAGLDEDFEVAFDYLQKACGLNNSGG CASLGSMYMLGRYVKKDPQKAFNFFKQACDMGSAVSCSRMGFMYSQGDAVPKDLRKALDNYERGCDMGDEVGCFALAGMY YNMKDKENAIMIYDKGCKLGMKQACENLTKLRGY
Specific function: May hydrolyze 6-aminopenicillinic acid and 7- aminocephalosporanic acid (ACA) derivatives [H]
COG id: COG0790
COG function: function code R; FOG: TPR repeat, SEL1 subfamily
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 8 TPR repeats [H]
Homologues:
Organism=Homo sapiens, GI19923669, Length=321, Percent_Identity=28.0373831775701, Blast_Score=92, Evalue=8e-19, Organism=Homo sapiens, GI151301150, Length=323, Percent_Identity=23.5294117647059, Blast_Score=79, Evalue=7e-15, Organism=Escherichia coli, GI87081769, Length=260, Percent_Identity=26.1538461538462, Blast_Score=81, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17563256, Length=329, Percent_Identity=24.3161094224924, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17537799, Length=191, Percent_Identity=30.3664921465969, Blast_Score=72, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6319410, Length=274, Percent_Identity=25.1824817518248, Blast_Score=78, Evalue=2e-15, Organism=Drosophila melanogaster, GI21355295, Length=288, Percent_Identity=25.6944444444444, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI116007256, Length=221, Percent_Identity=28.9592760180996, Blast_Score=74, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006597 - InterPro: IPR011990 [H]
Pfam domain/function: PF08238 Sel1 [H]
EC number: =3.5.2.6 [H]
Molecular weight: Translated: 39306; Mature: 39175
Theoretical pI: Translated: 7.89; Mature: 7.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 8.7 %Cys+Met (Translated Protein) 5.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 8.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVKILKILVCGLFFWSLQAHLWGKKDKSFLGVAERAYKSGNYSKAASYFKKACNDGVSE CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHH GCTQLGIIYENGQGTKIDYKKALEYYQSACQGDDREGCFGLGGLYDEGLGTTQNYQEAID HHHEEEEEEECCCCCEEHHHHHHHHHHHHHCCCCCCCCEECCCCHHCCCCCCHHHHHHHH AYANACVLKHPESCYNLGIIYDRKIKGNAAQAVTYYQKSCNFDMAKGCYVLGVAYEKGFL HHHHHEEECCCHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEHHHCCHH EVKQSNHKAVIYYLKACRLNDGQACRALGSLFENGDAGLDEDFEVAFDYLQKACGLNNSG EECCCCCCEEEEEEEHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC GCASLGSMYMLGRYVKKDPQKAFNFFKQACDMGSAVSCSRMGFMYSQGDAVPKDLRKALD CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHCCEECCCCCCHHHHHHHHH NYERGCDMGDEVGCFALAGMYYNMKDKENAIMIYDKGCKLGMKQACENLTKLRGY HHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure SVKILKILVCGLFFWSLQAHLWGKKDKSFLGVAERAYKSGNYSKAASYFKKACNDGVSE CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHH GCTQLGIIYENGQGTKIDYKKALEYYQSACQGDDREGCFGLGGLYDEGLGTTQNYQEAID HHHEEEEEEECCCCCEEHHHHHHHHHHHHHCCCCCCCCEECCCCHHCCCCCCHHHHHHHH AYANACVLKHPESCYNLGIIYDRKIKGNAAQAVTYYQKSCNFDMAKGCYVLGVAYEKGFL HHHHHEEECCCHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEHHHCCHH EVKQSNHKAVIYYLKACRLNDGQACRALGSLFENGDAGLDEDFEVAFDYLQKACGLNNSG EECCCCCCEEEEEEEHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC GCASLGSMYMLGRYVKKDPQKAFNFFKQACDMGSAVSCSRMGFMYSQGDAVPKDLRKALD CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHCCEECCCCCCHHHHHHHHH NYERGCDMGDEVGCFALAGMYYNMKDKENAIMIYDKGCKLGMKQACENLTKLRGY HHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]