Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

Click here to switch to the map view.

The map label for this gene is 188527022

Identifier: 188527022

GI number: 188527022

Start: 211146

End: 211940

Strand: Direct

Name: 188527022

Synonym: HPSH_01125

Alternate gene names: NA

Gene position: 211146-211940 (Clockwise)

Preceding gene: 188527021

Following gene: 188527024

Centisome position: 13.13

GC content: 33.84

Gene sequence:

>795_bases
TTGGGTTATTTTGACTATGATAAAGAAAGTCAAAACCCTAAAAGCCCTCTAAACCCATGGGCTTTTATTAGAGTCAAAAA
TGAAATCGTTACTTTAGAAGAGAGTTTGTCTTCTATGCTTCCTGCCATTCAAAGGGGGGTCATTGGTTTTAATGATTGCG
ATGATGGCTCTAAAGAAGTGATTTTAGAGTTTTGTAAAAAGTTCCCCTCATTTATCCCTATCAGCTATCCTTATGAAGTT
ATACTAAAGGATTGCCCGAGTTTGTGGCACCAGTTCTATCATTACTGTAATTATACGCTTTCTTTTATCCCTAAAAATGA
GTGGGTTATCAAAATTGATTGCGATCATATTTATGACGCTAAAAAACTTTATGAAAGTTTTTATATCCCTAAGAGCATTA
AAGAGGTTGTGATGTATTCGCGCATTAATTTTGTGGTGCGGGATTTTGAAGTGTTTGTGCGTAATGATGGGGATTTTGGG
TTTTTAGACGCATGGGGAGATCATTGGTTATTTTATAACGATTGTGAGCCTTTTGAAATTTGGCAACACAATGATGAAGC
TTATGAAATTTTAAAGCTTAAAGATAAATACCATATTAAAGATAAAGAACTTGTGCAATGGCACTTCCCTTTAGCTAAAA
AGAGGCGAAACGCTATTGTCAATAATGATTTAATCCCTTTAAAAGATTTTAAAAAGCACCATGCCGATTTGATAGGCACA
AGGATTGAAGAAAGCATGCTAGATGAAAAGAAAATTTTAGAAATGTATCAAAAATTCAATTTAGCGAAAGAATAG

Upstream 100 bases:

>100_bases
AGAGTATTTATAAAAATAGTTCTTATTATAATTATGGGGGGGGGGGCATTTAGAAGATAGGGTTATCCATCCCACTTTAA
CTCTGCCCAATCCCACGCAT

Downstream 100 bases:

>100_bases
CTACAAGCATGCAGTTTATTTCCTCACAAACTGCTTGTATAAAAATTCCTTTCTCCCTATGGCGATGATATGCCCGCGCA
TTTTGTCATGCAAATCGCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MGYFDYDKESQNPKSPLNPWAFIRVKNEIVTLEESLSSMLPAIQRGVIGFNDCDDGSKEVILEFCKKFPSFIPISYPYEV
ILKDCPSLWHQFYHYCNYTLSFIPKNEWVIKIDCDHIYDAKKLYESFYIPKSIKEVVMYSRINFVVRDFEVFVRNDGDFG
FLDAWGDHWLFYNDCEPFEIWQHNDEAYEILKLKDKYHIKDKELVQWHFPLAKKRRNAIVNNDLIPLKDFKKHHADLIGT
RIEESMLDEKKILEMYQKFNLAKE

Sequences:

>Translated_264_residues
MGYFDYDKESQNPKSPLNPWAFIRVKNEIVTLEESLSSMLPAIQRGVIGFNDCDDGSKEVILEFCKKFPSFIPISYPYEV
ILKDCPSLWHQFYHYCNYTLSFIPKNEWVIKIDCDHIYDAKKLYESFYIPKSIKEVVMYSRINFVVRDFEVFVRNDGDFG
FLDAWGDHWLFYNDCEPFEIWQHNDEAYEILKLKDKYHIKDKELVQWHFPLAKKRRNAIVNNDLIPLKDFKKHHADLIGT
RIEESMLDEKKILEMYQKFNLAKE
>Mature_263_residues
GYFDYDKESQNPKSPLNPWAFIRVKNEIVTLEESLSSMLPAIQRGVIGFNDCDDGSKEVILEFCKKFPSFIPISYPYEVI
LKDCPSLWHQFYHYCNYTLSFIPKNEWVIKIDCDHIYDAKKLYESFYIPKSIKEVVMYSRINFVVRDFEVFVRNDGDFGF
LDAWGDHWLFYNDCEPFEIWQHNDEAYEILKLKDKYHIKDKELVQWHFPLAKKRRNAIVNNDLIPLKDFKKHHADLIGTR
IEESMLDEKKILEMYQKFNLAKE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31643; Mature: 31511

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYFDYDKESQNPKSPLNPWAFIRVKNEIVTLEESLSSMLPAIQRGVIGFNDCDDGSKEV
CCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
ILEFCKKFPSFIPISYPYEVILKDCPSLWHQFYHYCNYTLSFIPKNEWVIKIDCDHIYDA
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCHHHHH
KKLYESFYIPKSIKEVVMYSRINFVVRDFEVFVRNDGDFGFLDAWGDHWLFYNDCEPFEI
HHHHHHHCCCHHHHHHHHHHHHHHHHEEEEEEEECCCCEEEEECCCCCEEEECCCCCHHH
WQHNDEAYEILKLKDKYHIKDKELVQWHFPLAKKRRNAIVNNDLIPLKDFKKHHADLIGT
CCCCCHHHHHHEECCCCCCCCHHHHEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
RIEESMLDEKKILEMYQKFNLAKE
HHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GYFDYDKESQNPKSPLNPWAFIRVKNEIVTLEESLSSMLPAIQRGVIGFNDCDDGSKEV
CCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
ILEFCKKFPSFIPISYPYEVILKDCPSLWHQFYHYCNYTLSFIPKNEWVIKIDCDHIYDA
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCHHHHH
KKLYESFYIPKSIKEVVMYSRINFVVRDFEVFVRNDGDFGFLDAWGDHWLFYNDCEPFEI
HHHHHHHCCCHHHHHHHHHHHHHHHHEEEEEEEECCCCEEEEECCCCCEEEECCCCCHHH
WQHNDEAYEILKLKDKYHIKDKELVQWHFPLAKKRRNAIVNNDLIPLKDFKKHHADLIGT
CCCCCHHHHHHEECCCCCCCCHHHHEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
RIEESMLDEKKILEMYQKFNLAKE
HHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA