| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is mnmG [H]
Identifier: 188527017
GI number: 188527017
Start: 205212
End: 207077
Strand: Reverse
Name: mnmG [H]
Synonym: HPSH_01100
Alternate gene names: 188527017
Gene position: 207077-205212 (Counterclockwise)
Preceding gene: 188527023
Following gene: 188527016
Centisome position: 12.87
GC content: 41.85
Gene sequence:
>1866_bases GTGGTAAAAGAAAGTGATATTTTAGTGATTGGTGGGGGGCATGCAGGCATTGAAGCGAGCTTGATTGCAGCCAAAATGGG GGCTAGAGTGCATCTAATCACCATGCTCATAGACACGATCGGTTTGGCGAGCTGTAACCCGGCGATTGGAGGCTTGGGTA AAGGGCATTTGACTAAAGAAGTGGATGTTTTAGGGGGGGCTATGGGGATTATTACGGATAATAGCGGTTTGCAATATCGT GTGTTAAACGCTTCTAAAGGGCCGGCAGTTAGAGGGACTAGAGCGCAAATTGATATGGATACTTACCGCATTTTTGCAAG GAATCTTGTTTTAAACACCCCTAATTTGAGCGTTTCTCAAGAAATGACTGAAAGTTTAATCATTGAAAATGATGAGATGG TGGGCGTAACCACGAACATTAACAACACTTATAAGGCTAAAAAAGTGATCATCACCACAGGCACTTTTTTAAAAGGGGTG GTGCATATTGGCGAGCACCAAAACCAAAACGGGCGCTTTGGGGAAAACGCTTCTAATTCTTTAGCCTTGAATTTAAGGGA GCTTGGCTTTAGGGTGGAAAGGTTAAAAACCGGTACTTGCCCAAGAGTGGCAGGCAATAGCATTGATTTTGAAGGATTAG AAGAGCATTTTGGGGACACAAACCCTCCCTATTTTAGCTATAAAACCAAAGATTTTAACCCCACCCAACTCTCATGTTTT ATCACTTACACCAACCCTATTACCCACCAAATCATTAGGGATAATTTCCACCGAGCCCCCCTATTTAGCGGTCAAATTGA AGGCATAGGCCCAAGGTATTGCCCTAGCATTGAAGATAAGATCAATCGCTTCAGCGAAAAAGAACGCCACCAGCTGTTTT TAGAGCCTCAAACCATCCACAAAAGCGAATATTATATCAACGGCTTAAGCACCTCTTTACCCCTAGATGTGCAAGAAAAG GTCATTCACTCTATCAAAGGCTTAGAAAACGCTCTCATCACGCGCTATGGCTATGCGATAGAGTATGATTTTATCCAGCC CACGGAATTGACCCACACTTTAGAAACCAAAAAAATCAAGGGGCTTTATTTGGCCGGGCAAATCAATGGGACTACCGGCT ATGAAGAAGCGGCGGCTCAAGGGCTTATGGCTGGGATTAATGCGGTATTAGCCTTAAAGAATCAAGACCCCTTTATTTTA AAGCGCAATGAAGCTTATATCGGCGTTTTGATTGATGATTTGGTGACTAAAGGCACGAATGAGCCTTACAGAATGTTTAC CAGCCGAGCCGAATACCGCTTGCTTTTAAGAGAGGACAACACGCTTTTTAGATTAGGCGAACATGCCTATCGTTTAGGGC TTATGGAAGAGGATTTTTATAAGGGATTGAAAAAAGACCAACAAGAGATACAAGACAATCTCAAACGCCTTAAAGAATGC GTCCTTACCCCCAGTAAAGAAGTGTTAAAACGCTTGAATGAATTAGACGAAAACCCTATCAATGACAAGGTTGATGGCGT TAGCCTTTTAGCGCGCGATAGTTTTAATCTAGAAAAAATGCGCTCCTTTTTCAGCTTTTTAACGCCTTTGAATGAGCGGG TTTTAGAGCAGATTAAAATTGAATGCAAGTATAATATTTATATTGAAAAGCAACACGAAAATATCGCTAAAATGGATAGC ATGCTCAAAGTTTCTATCCCTAAAGGTTTTGTGTTTAAAGGCATTCCAGGCTTAAGCTTAGAAGCGGTAGAAAAGTTAGA AAAATTCCGCCCCAAAAGCCTTTTTGAAGCCTCAGAAATCAGCGGGATCACCCCGGCGAATTTAGATGTTTTGCATTTAT ACATCCATTTGCGAAAAAACTCTTAA
Upstream 100 bases:
>100_bases TCCATTTTATTTTACCCTTTAAAATTACTAACCTCCATGCTACAATAAAACTTTTTCAAAACTAAGATTTTAGAAAAATC ATATCAAAACAGGAAAAGAA
Downstream 100 bases:
>100_bases AGGATTTTTAATGGACGCTTTAGAAATCACCCAAAAGCTCATCAGCTACCCCACCATTACGCCCAAAGAATGCGGTATTT TTGAATACATTAAATCGCTT
Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
Products: NA
Alternate protein names: Glucose-inhibited division protein A [H]
Number of amino acids: Translated: 621; Mature: 621
Protein sequence:
>621_residues MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKEVDVLGGAMGIITDNSGLQYR VLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQEMTESLIIENDEMVGVTTNINNTYKAKKVIITTGTFLKGV VHIGEHQNQNGRFGENASNSLALNLRELGFRVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIHKSEYYINGLSTSLPLDVQEK VIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIKGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFIL KRNEAYIGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKGLKKDQQEIQDNLKRLKEC VLTPSKEVLKRLNELDENPINDKVDGVSLLARDSFNLEKMRSFFSFLTPLNERVLEQIKIECKYNIYIEKQHENIAKMDS MLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLFEASEISGITPANLDVLHLYIHLRKNS
Sequences:
>Translated_621_residues MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKEVDVLGGAMGIITDNSGLQYR VLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQEMTESLIIENDEMVGVTTNINNTYKAKKVIITTGTFLKGV VHIGEHQNQNGRFGENASNSLALNLRELGFRVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIHKSEYYINGLSTSLPLDVQEK VIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIKGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFIL KRNEAYIGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKGLKKDQQEIQDNLKRLKEC VLTPSKEVLKRLNELDENPINDKVDGVSLLARDSFNLEKMRSFFSFLTPLNERVLEQIKIECKYNIYIEKQHENIAKMDS MLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLFEASEISGITPANLDVLHLYIHLRKNS >Mature_621_residues MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKEVDVLGGAMGIITDNSGLQYR VLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQEMTESLIIENDEMVGVTTNINNTYKAKKVIITTGTFLKGV VHIGEHQNQNGRFGENASNSLALNLRELGFRVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIHKSEYYINGLSTSLPLDVQEK VIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIKGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFIL KRNEAYIGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKGLKKDQQEIQDNLKRLKEC VLTPSKEVLKRLNELDENPINDKVDGVSLLARDSFNLEKMRSFFSFLTPLNERVLEQIKIECKYNIYIEKQHENIAKMDS MLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLFEASEISGITPANLDVLHLYIHLRKNS
Specific function: NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 [H]
COG id: COG0445
COG function: function code D; NAD/FAD-utilizing enzyme apparently involved in cell division
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MnmG family [H]
Homologues:
Organism=Homo sapiens, GI74024895, Length=628, Percent_Identity=42.3566878980892, Blast_Score=430, Evalue=1e-120, Organism=Homo sapiens, GI19882217, Length=653, Percent_Identity=41.04134762634, Blast_Score=416, Evalue=1e-116, Organism=Homo sapiens, GI183227703, Length=668, Percent_Identity=39.8203592814371, Blast_Score=409, Evalue=1e-114, Organism=Escherichia coli, GI2367273, Length=612, Percent_Identity=48.3660130718954, Blast_Score=594, Evalue=1e-171, Organism=Caenorhabditis elegans, GI17534255, Length=619, Percent_Identity=39.5799676898223, Blast_Score=423, Evalue=1e-118, Organism=Saccharomyces cerevisiae, GI6321202, Length=623, Percent_Identity=39.9678972712681, Blast_Score=432, Evalue=1e-122, Organism=Drosophila melanogaster, GI24658174, Length=629, Percent_Identity=41.6534181240064, Blast_Score=447, Evalue=1e-125,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004416 - InterPro: IPR002218 - InterPro: IPR020595 [H]
Pfam domain/function: PF01134 GIDA [H]
EC number: NA
Molecular weight: Translated: 69711; Mature: 69711
Theoretical pI: Translated: 7.10; Mature: 7.10
Prosite motif: PS01280 GIDA_1 ; PS01281 GIDA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE CCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ HHHHCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHEEECCCCCHHH EMTESLIIENDEMVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS HHHHHHEECCCCEEEEEECCCCCEEEEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCE LALNLRELGFRVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF EEEEHHHHCCCHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCEEEEE ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH EEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHEEEECCHHHC KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHEEC GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGTN EEEEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEECCCCEEEEEHHHHHHCCCC EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKGLKKDQQEIQDNLKRLKEC CHHHHHHCCCCEEEEEECCCCEEEECHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH VLTPSKEVLKRLNELDENPINDKVDGVSLLARDSFNLEKMRSFFSFLTPLNERVLEQIKI HCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHEEE ECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLFEASEI EEEEEEEEEECCCCHHHHHCEEEEECCCCEEECCCCCCCHHHHHHHHHCCCHHHCCHHHC SGITPANLDVLHLYIHLRKNS CCCCCCCCEEEEEEEEEECCC >Mature Secondary Structure MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE CCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ HHHHCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHEEECCCCCHHH EMTESLIIENDEMVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS HHHHHHEECCCCEEEEEECCCCCEEEEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCE LALNLRELGFRVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF EEEEHHHHCCCHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCEEEEE ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH EEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHEEEECCHHHC KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHEEC GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGTN EEEEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEECCCCEEEEEHHHHHHCCCC EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKGLKKDQQEIQDNLKRLKEC CHHHHHHCCCCEEEEEECCCCEEEECHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH VLTPSKEVLKRLNELDENPINDKVDGVSLLARDSFNLEKMRSFFSFLTPLNERVLEQIKI HCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHEEE ECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLFEASEI EEEEEEEEEECCCCHHHHHCEEEEECCCCEEECCCCCCCHHHHHHHHHCCCHHHCCHHHC SGITPANLDVLHLYIHLRKNS CCCCCCCCEEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA