Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188526932

Identifier: 188526932

GI number: 188526932

Start: 124678

End: 125109

Strand: Direct

Name: 188526932

Synonym: HPSH_00645

Alternate gene names: NA

Gene position: 124678-125109 (Clockwise)

Preceding gene: 188526931

Following gene: 188526933

Centisome position: 7.75

GC content: 37.04

Gene sequence:

>432_bases
ATGAAAAAATTGGCGTTTTCTTTATTGTTTACAGGGACTTTTTTGGGGCTTTTTTTGAATGCGAGTGATTTTAAGAGCAT
GGATGATAAGCAACTATTGGAGCAAGCAGGGAAAGTTGCTCCTAGCGAAGTTCCAGAGTTTCGTGCAGAAATCAATAAGC
GATTAGCAGTGATGAAAGAAGAAGAGCGTAAAAGTTATAAAGCCGAATTTAAAAAAGCGATGGATAAAAATTTAGCCTCT
TTAAGCCAAGAAGATCGCAACAAGCGTAAAAAAGAAATTCTTGAAGTGATTGCTAATAAAAAGAAAACTATGACCATGAA
AGAATACCGCCAAGAGGGGCTAGATTTGCATGATTGCGCATGTGAAGGCCCTTTTCATGATCATGAGAAAAAGGGAAAAA
AAGGCAAACAACCAAGCCATCATAAGCATTAA

Upstream 100 bases:

>100_bases
CATAAAATTTAAAAATCAATTGGCTGTTAAAGCGCTATAAGTTATCTTTAATCAATCAAATGATAGAATCTACTTTTTAT
TTTTGAATTGGGAGCATTTG

Downstream 100 bases:

>100_bases
CGCTTAAGGTGTGCTGACTTTTTTTGATTTTTGTAAAACCACGCCGTAAGTTTCTAGCTTTTGGCTAGGGGATATAAGGC
GTTTTCGTGTTATAATTCTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MKKLAFSLLFTGTFLGLFLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEINKRLAVMKEEERKSYKAEFKKAMDKNLAS
LSQEDRNKRKKEILEVIANKKKTMTMKEYRQEGLDLHDCACEGPFHDHEKKGKKGKQPSHHKH

Sequences:

>Translated_143_residues
MKKLAFSLLFTGTFLGLFLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEINKRLAVMKEEERKSYKAEFKKAMDKNLAS
LSQEDRNKRKKEILEVIANKKKTMTMKEYRQEGLDLHDCACEGPFHDHEKKGKKGKQPSHHKH
>Mature_143_residues
MKKLAFSLLFTGTFLGLFLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEINKRLAVMKEEERKSYKAEFKKAMDKNLAS
LSQEDRNKRKKEILEVIANKKKTMTMKEYRQEGLDLHDCACEGPFHDHEKKGKKGKQPSHHKH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16539; Mature: 16539

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLAFSLLFTGTFLGLFLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEINKRLAVMKE
CCHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
EERKSYKAEFKKAMDKNLASLSQEDRNKRKKEILEVIANKKKTMTMKEYRQEGLDLHDCA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHH
CEGPFHDHEKKGKKGKQPSHHKH
CCCCCCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKKLAFSLLFTGTFLGLFLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEINKRLAVMKE
CCHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
EERKSYKAEFKKAMDKNLASLSQEDRNKRKKEILEVIANKKKTMTMKEYRQEGLDLHDCA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHH
CEGPFHDHEKKGKKGKQPSHHKH
CCCCCCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA