Click here to switch to the map view.

The map label for this gene is flaB [H]

Identifier: 188526919

GI number: 188526919

Start: 109767

End: 111311

Strand: Reverse

Name: flaB [H]

Synonym: HPSH_00580

Alternate gene names: 188526919

Gene position: 111311-109767 (Counterclockwise)

Preceding gene: 188526922

Following gene: 188526918

Centisome position: 6.92

GC content: 46.08

Gene sequence:

>1545_bases
ATGAGTTTTAGGATAAATACCAATATCGCCGCTTTAACTTCTCATGCGGTAGGGGTTCAAAACAACAGAGACCTTTCAAG
CTCGCTTGAAAAGTTAAGCTCAGGGCTTAGAATCAATAAAGCCGCTGACGATTCTAGTGGGATGGCGATCGCTGATAGCT
TAAGGAGTCAAAGCGCGAATTTGGGTCAAGCGATCCGCAACGCTAATGACGCTATTGGTATGGTTCAAACCGCTGATAAA
GCGATGGATGAGCAAATCAAAATCTTAGACACCATTAAAACCAAAGCCGTTCAAGCCGCTCAAGACGGGCAAACTTTAGA
AAGCCGAAGAGCGCTCCAGAGCGATATTCAAAGGTTGTTAGAAGAACTAGACAATATCGCTAACACCACAAGCTTTAACG
GCCAACAAATGCTTTCAGGAAGTTTTTCTAACAAAGAATTTCAAATTGGTGCGTATTCTAACACCACGGTTAAAGCGTCC
ATTGGCTCAACGAGTTCGGATAAGATTGGGCATGTGCGCATGGAAACCTCTTCTTTTAGCGGTGAAGGCATGCTCGCTAG
CGCGGCGGCGCAAAACTTGACTGAAGTGGGATTGAATTTCAAACAAGTCAATGGCGTGAATGATTATAAAATTGAAACCG
TGCGCATTTCTACGAGTGCTGGCACTGGGATTGGAGCGTTAAGTGAAATCATCAATCGTTTTTCTAACACTTTAGGCGTT
AGGGCTTCTTATAATGTCATGGCTACCGGCGGCACTCCCGTGCAATCAGGAACTGTAAGGGATCTTACTATTAATGGCGT
AGAAATTGGAACCGTGAATGATGTGCATAAAAACGACGCTGATGGGAGATTGATTAATGCGATAAACTCCGTCAAAGACA
GGACCGGCGTGGAAGCGAGCTTGGATATTCAAGGGCGCATCAATTTACACTCCATTGACGGGCGTGCGATTTCTGTGCAT
GCAACGAGCGCGAGCGGTCAGGTTTTTGGGGGAGGGAATTTTGCAGGGATTTCTGGGACACAGCATGCGGTTATTGGGCG
CTTAACCTTGACTAGGACCGACGCTAGGGACATCATTGTGAGCGGTGTGAATTTTAGCCATGTGGGCTTTCATTCCGCTC
AAGGGGTGGCAGAATACACCGTGAATTTGAGAGCGGTTAGGGGCATTTTTGATGCGAATGTGGCTTCAGCAGCCGGAGCG
AACGCTAATGGCGCGCAAGCTGAAACCAATTCTCAAGGTATAGGGGCTGGGGTAACAAGCCTTAAAGGGGCGATGATTGT
GATGGATATGGCGGATTCAGCGCGCACGCAATTAGACAAGATTCGCTCGGATATGGGTTCAGTGCAAATGGAATTGGTTA
CAACCATCAATAATATTTCTGTAACCCAAGTGAATGTTAAAGCGGCTGAATCTCAAATCAGGGATGTGGATTTTGCTGAA
GAGAGCGCGAACTTTTCTAAATACAATATTTTGGCGCAAAGCGGGAGTTTTGCTATGGCACAAGCGAATGCGGTGCAACA
GAATGTCTTAAGGCTTTTACAATAA

Upstream 100 bases:

>100_bases
CGCCCTATTAAACCATAAAAACCATAACAGCGCTAAAAATCAAAGAGTTGGAACACCCTTTGCTTGAATAACAGCAAATA
TCTATGCAAAGGATGCAAAC

Downstream 100 bases:

>100_bases
CAGCCCTTTTAATCCAAAGGGGCGTTAGCCCTTTTTATCAGTTATTTTTATAAGTTAGAATGATGGGTATTTACCAAAAA
AACTTACAAGCTCTTTTCAA

Product: flagellin B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 514; Mature: 513

Protein sequence:

>514_residues
MSFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSANLGQAIRNANDAIGMVQTADK
AMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKAS
IGSTSSDKIGHVRMETSSFSGEGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGV
RASYNVMATGGTPVQSGTVRDLTINGVEIGTVNDVHKNDADGRLINAINSVKDRTGVEASLDIQGRINLHSIDGRAISVH
ATSASGQVFGGGNFAGISGTQHAVIGRLTLTRTDARDIIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGA
NANGAQAETNSQGIGAGVTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRDVDFAE
ESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ

Sequences:

>Translated_514_residues
MSFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSANLGQAIRNANDAIGMVQTADK
AMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKAS
IGSTSSDKIGHVRMETSSFSGEGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGV
RASYNVMATGGTPVQSGTVRDLTINGVEIGTVNDVHKNDADGRLINAINSVKDRTGVEASLDIQGRINLHSIDGRAISVH
ATSASGQVFGGGNFAGISGTQHAVIGRLTLTRTDARDIIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGA
NANGAQAETNSQGIGAGVTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRDVDFAE
ESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ
>Mature_513_residues
SFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSANLGQAIRNANDAIGMVQTADKA
MDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASI
GSTSSDKIGHVRMETSSFSGEGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGVR
ASYNVMATGGTPVQSGTVRDLTINGVEIGTVNDVHKNDADGRLINAINSVKDRTGVEASLDIQGRINLHSIDGRAISVHA
TSASGQVFGGGNFAGISGTQHAVIGRLTLTRTDARDIIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGAN
ANGAQAETNSQGIGAGVTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRDVDFAEE
SANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ

Specific function: Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. Important for motility and virulence [H]

COG id: COG1344

COG function: function code N; Flagellin and related hook-associated proteins

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial flagellin family [H]

Homologues:

Organism=Escherichia coli, GI1788232, Length=157, Percent_Identity=39.4904458598726, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: 200,000-400,000 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001492
- InterPro:   IPR001029
- InterPro:   IPR010810 [H]

Pfam domain/function: PF00700 Flagellin_C; PF07196 Flagellin_IN; PF00669 Flagellin_N [H]

EC number: NA

Molecular weight: Translated: 53999; Mature: 53868

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSAN
CEEEECCCCEEEHHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHCCCH
LGQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLL
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
EELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIGSTSSDKIGHVRMETSSFS
HHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCCC
GEGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGV
CCCEEHHHHHHHHHHHCCCEEEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCC
RASYNVMATGGTPVQSGTVRDLTINGVEIGTVNDVHKNDADGRLINAINSVKDRTGVEAS
EEEEEEEECCCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
LDIQGRINLHSIDGRAISVHATSASGQVFGGGNFAGISGTQHAVIGRLTLTRTDARDIIV
EEEEEEEEEEEECCEEEEEEEECCCCEEEECCCEECCCCCCEEEEEEEEEEECCCCEEEE
SGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGANANGAQAETNSQGIGAGVTS
ECCCCCCCCCCCCCCHHHHEEEHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCHHH
LKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRDVDFAE
CCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEEEEECCEEEEEEEHHHHHHHHHCCCCHH
ESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ
HCCCCCEEEEEEECCCEEEHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSAN
EEEECCCCEEEHHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHCCCH
LGQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLL
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
EELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIGSTSSDKIGHVRMETSSFS
HHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCCC
GEGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGV
CCCEEHHHHHHHHHHHCCCEEEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCC
RASYNVMATGGTPVQSGTVRDLTINGVEIGTVNDVHKNDADGRLINAINSVKDRTGVEAS
EEEEEEEECCCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
LDIQGRINLHSIDGRAISVHATSASGQVFGGGNFAGISGTQHAVIGRLTLTRTDARDIIV
EEEEEEEEEEEECCEEEEEEEECCCCEEEECCCEECCCCCCEEEEEEEEEEECCCCEEEE
SGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGANANGAQAETNSQGIGAGVTS
ECCCCCCCCCCCCCCHHHHEEEHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCHHH
LKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRDVDFAE
CCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEEEEECCEEEEEEEHHHHHHHHHCCCCHH
ESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ
HCCCCCEEEEEEECCCEEEHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]