Click here to switch to the map view.

The map label for this gene is trbI [H]

Identifier: 188526851

GI number: 188526851

Start: 37323

End: 38459

Strand: Direct

Name: trbI [H]

Synonym: HPSH_00205

Alternate gene names: 188526851

Gene position: 37323-38459 (Clockwise)

Preceding gene: 188526850

Following gene: 188526852

Centisome position: 2.32

GC content: 41.42

Gene sequence:

>1137_bases
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTAGGGGGTTTTGCAACGATCATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAGCCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATTAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAACCCTCCCATAGATTTAAAAAC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTATGAAGAAAACCTGATTTTCCCTATGGATAACCCTAAAGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAATATGCGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAAGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCAAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Upstream 100 bases:

>100_bases
ATTGTGGGCGATTACATTATCGCTGAAGATGTCTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCG
TTTTATCAAAAAGGGTAAAG

Downstream 100 bases:

>100_bases
CTCAAAAAACGCCCGATTAAAAACGCTATAATAACCCTAAAAAACAAAAGAGAGCCTGACAAGGAAACTCATGAAAATTA
AAAATATCTTACTGAGTGGG

Product: comB10 competence protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKNPPIDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEYATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Sequences:

>Translated_378_residues
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKNPPIDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEYATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
>Mature_378_residues
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKNPPIDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEYATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 42244; Mature: 42244

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TNTESSKDATIKALQEQLKAALKALNSKEMNSSKEETFKNPPIDLKTNTTPPKKDFSLKQ
CCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHCCCCCCCEECCCCCCCCCCCHHH
LDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKEKDIATNENKLLRTITADKMI
HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHCCCCCCCHHEEEHHHHHHC
PAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCCEEHEEHHH
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALN
HHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCEEEEEHHHHC
NRGNKEYATNFFGDYLLLQLMRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNT
CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECCCEEEECCCC
DIFFPIPKENEVIAEFLK
CEEEECCCCCHHHHHHHC
>Mature Secondary Structure
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TNTESSKDATIKALQEQLKAALKALNSKEMNSSKEETFKNPPIDLKTNTTPPKKDFSLKQ
CCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHCCCCCCCEECCCCCCCCCCCHHH
LDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKEKDIATNENKLLRTITADKMI
HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHCCCCCCCHHEEEHHHHHHC
PAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCCEEHEEHHH
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALN
HHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCEEEEEHHHHC
NRGNKEYATNFFGDYLLLQLMRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNT
CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECCCEEEECCCC
DIFFPIPKENEVIAEFLK
CEEEECCCCCHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]