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The map label for this gene is nusB

Identifier: 188526813

GI number: 188526813

Start: 11

End: 427

Strand: Reverse

Name: nusB

Synonym: HPSH_00005

Alternate gene names: 188526813

Gene position: 427-11 (Counterclockwise)

Preceding gene: 188526814

Following gene: NA

Centisome position: 0.03

GC content: 40.77

Gene sequence:

>417_bases
ATGGCGACACGAACTCAAGCCAGGGGGGCGGTGGTTGAATTGTTGTATGCGTTTGAGAGCGGTAATGAAGAAATTAAAAA
AATCGCTTCCAGCATGTTAGAAGAAAAAAAGATTAAAAACAACCAGCTTGCTTTCGCTTTAAGTCTTTTTAATGGCGTGT
TGGAAAAAATCAATGAAATTGACGCCCTCATTGAACCGCATTTAAAAGACTGGGATTTCAAACGATTAGGGAGCATGGAA
AAGGCGATCTTACGTTTAGGAGCGTATGAAATTGGCTTCACGCCCACGCAAAACCCCATCATCATCAATGAATGCATAGA
GCTTGGCAAACTCTATGCTGAGCCTAACACCCCTAAATTTTTAAACGCTATCTTGGATTCTTTGAGTAAAAAGCTCGCTC
AAAAACCCTTGAATTGA

Upstream 100 bases:

>100_bases
GCGATTGAAAGAGCGGGCAGTAAAGCCGGCAATAAGGGCTTTGAAGCGATGAGCACTCTCATTGAATTATTGAGCTTGTG
CCAAACTCTCAAGGGTTAAA

Downstream 100 bases:

>100_bases
GGGTGTTTTAAATTTAATGATTTTAAAAAATTAAAAAGAGAACATGATTCAAGCTAACCAAAGAATTGATGCTTTAAAGC
ATGAAATCTATAGAGCTTAA

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLEKINEIDALIEPHLKDWDFKRLGSME
KAILRLGAYEIGFTPTQNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKLAQKPLN

Sequences:

>Translated_138_residues
MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLEKINEIDALIEPHLKDWDFKRLGSME
KAILRLGAYEIGFTPTQNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKLAQKPLN
>Mature_137_residues
ATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLEKINEIDALIEPHLKDWDFKRLGSMEK
AILRLGAYEIGFTPTQNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKLAQKPLN

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=116, Percent_Identity=30.1724137931034, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 15491; Mature: 15360

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLEKINEI
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
DALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGKLYAEPNTPKF
HHHHCCCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHH
LNAILDSLSKKLAQKPLN
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLEKINEI
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
DALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGKLYAEPNTPKF
HHHHCCCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHH
LNAILDSLSKKLAQKPLN
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA