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The map label for this gene is dedA [H]

Identifier: 187935696

GI number: 187935696

Start: 2703789

End: 2704436

Strand: Reverse

Name: dedA [H]

Synonym: CLL_A2592

Alternate gene names: 187935696

Gene position: 2704436-2703789 (Counterclockwise)

Preceding gene: 187934867

Following gene: 187933313

Centisome position: 71.16

GC content: 25.46

Gene sequence:

>648_bases
ATGGAAAACGCAAGTCAAATAGTAGATATATTTATACATATGAATAAATATATTGGAATGATAATTAATAATTATGGAAT
GCAAACTTATTTAATTTTGTTTATTGTAGTATTTTGTGAAACAGGATTGGTTGTAACTCCATTTTTACCAGGAGATTCAC
TGATATTTGCAGCAGCTACATTTGCAGCTATGGGAGCTTTAAATATTTATATTTTAGTAATATTATTAATATTTGCAGCC
ATATTAGGTGATACAGTGAATTATGAGATTGGAAGGCTATTTGGAAATAAGTTAATAAAAAACAACATAGTAAAAAAAGA
TCATATAGAAAAGACCAATAAATTTTATGAAAAGCATGGCGTGAAAACTATAATGTTTGCAAGATTTATTCCTATAGTAC
GTACAATTGCTCCATTTGTAGCTGGAATTGGAAAAATGAATTATAAAGATTTTATATTATTCAATGTTATTGGCGGAAAT
TTATGGGTAATTATATTGTCTATATGTGGATATTTCTTTGGAAATATTAGATTTGTCAGAAATAACTTATCACTTATTTT
AATAGGAATGATAATTATATCTGTTTTACCAGCCGTAATTGTATTTATAAATGAAAAACGAAAAAACTCGCTAATTAAAA
AAGTATAA

Upstream 100 bases:

>100_bases
TTTATGTTAAATGTAGGTAAAAAACAAAAAGTTAAAGAAATATGATATATAATCATATTTAATAAAATAATACTTGAATT
ACACAAATAAGGAGTAAAAT

Downstream 100 bases:

>100_bases
AACTAGTGGCTATCTTAATATATTAAGATAGCCACTAGTTTTATACTTTAAATTTAATTTTATTTTTAATATTTAAATAC
AAATATGTAATTAAGCATAA

Product: membrane protein, DedA family

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MENASQIVDIFIHMNKYIGMIINNYGMQTYLILFIVVFCETGLVVTPFLPGDSLIFAAATFAAMGALNIYILVILLIFAA
ILGDTVNYEIGRLFGNKLIKNNIVKKDHIEKTNKFYEKHGVKTIMFARFIPIVRTIAPFVAGIGKMNYKDFILFNVIGGN
LWVIILSICGYFFGNIRFVRNNLSLILIGMIIISVLPAVIVFINEKRKNSLIKKV

Sequences:

>Translated_215_residues
MENASQIVDIFIHMNKYIGMIINNYGMQTYLILFIVVFCETGLVVTPFLPGDSLIFAAATFAAMGALNIYILVILLIFAA
ILGDTVNYEIGRLFGNKLIKNNIVKKDHIEKTNKFYEKHGVKTIMFARFIPIVRTIAPFVAGIGKMNYKDFILFNVIGGN
LWVIILSICGYFFGNIRFVRNNLSLILIGMIIISVLPAVIVFINEKRKNSLIKKV
>Mature_215_residues
MENASQIVDIFIHMNKYIGMIINNYGMQTYLILFIVVFCETGLVVTPFLPGDSLIFAAATFAAMGALNIYILVILLIFAA
ILGDTVNYEIGRLFGNKLIKNNIVKKDHIEKTNKFYEKHGVKTIMFARFIPIVRTIAPFVAGIGKMNYKDFILFNVIGGN
LWVIILSICGYFFGNIRFVRNNLSLILIGMIIISVLPAVIVFINEKRKNSLIKKV

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=204, Percent_Identity=50.9803921568627, Blast_Score=226, Evalue=1e-60,
Organism=Escherichia coli, GI1789481, Length=149, Percent_Identity=36.9127516778523, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1789384, Length=169, Percent_Identity=30.7692307692308, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082056, Length=143, Percent_Identity=26.5734265734266, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786252, Length=151, Percent_Identity=25.8278145695364, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24235; Mature: 24235

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENASQIVDIFIHMNKYIGMIINNYGMQTYLILFIVVFCETGLVVTPFLPGDSLIFAAAT
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
FAAMGALNIYILVILLIFAAILGDTVNYEIGRLFGNKLIKNNIVKKDHIEKTNKFYEKHG
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
VKTIMFARFIPIVRTIAPFVAGIGKMNYKDFILFNVIGGNLWVIILSICGYFFGNIRFVR
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
NNLSLILIGMIIISVLPAVIVFINEKRKNSLIKKV
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MENASQIVDIFIHMNKYIGMIINNYGMQTYLILFIVVFCETGLVVTPFLPGDSLIFAAAT
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
FAAMGALNIYILVILLIFAAILGDTVNYEIGRLFGNKLIKNNIVKKDHIEKTNKFYEKHG
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
VKTIMFARFIPIVRTIAPFVAGIGKMNYKDFILFNVIGGNLWVIILSICGYFFGNIRFVR
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
NNLSLILIGMIIISVLPAVIVFINEKRKNSLIKKV
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]