| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is yqgA [H]
Identifier: 187935485
GI number: 187935485
Start: 2880748
End: 2881449
Strand: Reverse
Name: yqgA [H]
Synonym: CLL_A2799
Alternate gene names: 187935485
Gene position: 2881449-2880748 (Counterclockwise)
Preceding gene: 187932899
Following gene: 187933616
Centisome position: 75.82
GC content: 27.78
Gene sequence:
>702_bases ATGCCTATTGGTGTTTTTTTAGATTCTTTAGCAGTTTTAATAGGGGGACTTTGTGGGGCTAAATTTAAACATAAAATACC ACAAAGCATTAACTATCCACTAACAATTATTTTTGGGATTTCGGCTATTGTAATTGGAATAGTATCATGTATTAAATTAA AGTCTTTGCCAGCAGTTATATTGTCATTGATTTTGGGAACTTTAATTGGAGAATTAATGGATTTGGATACAAAAGTAAAA AATCTATTTAAGAAAGTTATTTATAAATTTAATTTTAAGATTTATGGAGATCAAGAAGCTTATATGAGCTTTTATGTGAT TGTGGCTGCTACTTTTTGTTTAAGTGGAACAAATATTTTTGGTGCAATGAATGAAGCTATGACAGGAGATATTACAATAT TATTATCAAAGGCTATTATGGACATTTTTGCTGGAGCTATTTTTGCATGTACACTTGGATATGCAATGAATTTAATTATT GTTCCTCAAGTTTTAATTTTAGGTACATTTTTTTATCTTGCAAAGTGTATTATGCCATTAATAAGTGCGAATATGTTAGC AGATTTTACAGCCATTGGAGGAATATTAACTTTTGTCATTGGCTTATCTATTGCAGAGATTAAAAAAATAAAAGTAGTTA ATTTACTTCCAGCATTGTTAATTATATTTCCTATATCATGTTTGTTTGAATTGATGTTATAA
Upstream 100 bases:
>100_bases TGATAAAGAAAAATATATGAAATTATTGACTTTATGGGTTTGCTATGTTAATATTTCATATCTTTTGCAAAAGAAACTTA ATAGAAAGAAGGTAATTATC
Downstream 100 bases:
>100_bases ACATGTTTTAGTGTTTTGTAGGAAATATAATAGATTAAATGTACAAGATTTGTAAGAAAATACTTAATATTGAGATTATG AGTTTGAATATCTAAGAGGC
Product: integral membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 233; Mature: 232
Protein sequence:
>233_residues MPIGVFLDSLAVLIGGLCGAKFKHKIPQSINYPLTIIFGISAIVIGIVSCIKLKSLPAVILSLILGTLIGELMDLDTKVK NLFKKVIYKFNFKIYGDQEAYMSFYVIVAATFCLSGTNIFGAMNEAMTGDITILLSKAIMDIFAGAIFACTLGYAMNLII VPQVLILGTFFYLAKCIMPLISANMLADFTAIGGILTFVIGLSIAEIKKIKVVNLLPALLIIFPISCLFELML
Sequences:
>Translated_233_residues MPIGVFLDSLAVLIGGLCGAKFKHKIPQSINYPLTIIFGISAIVIGIVSCIKLKSLPAVILSLILGTLIGELMDLDTKVK NLFKKVIYKFNFKIYGDQEAYMSFYVIVAATFCLSGTNIFGAMNEAMTGDITILLSKAIMDIFAGAIFACTLGYAMNLII VPQVLILGTFFYLAKCIMPLISANMLADFTAIGGILTFVIGLSIAEIKKIKVVNLLPALLIIFPISCLFELML >Mature_232_residues PIGVFLDSLAVLIGGLCGAKFKHKIPQSINYPLTIIFGISAIVIGIVSCIKLKSLPAVILSLILGTLIGELMDLDTKVKN LFKKVIYKFNFKIYGDQEAYMSFYVIVAATFCLSGTNIFGAMNEAMTGDITILLSKAIMDIFAGAIFACTLGYAMNLIIV PQVLILGTFFYLAKCIMPLISANMLADFTAIGGILTFVIGLSIAEIKKIKVVNLLPALLIIFPISCLFELML
Specific function: Unknown
COG id: COG1811
COG function: function code R; Uncharacterized membrane protein, possible Na+ channel or pump
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789338, Length=221, Percent_Identity=41.6289592760181, Blast_Score=135, Evalue=2e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007563 [H]
Pfam domain/function: PF04474 DUF554 [H]
EC number: NA
Molecular weight: Translated: 25221; Mature: 25090
Theoretical pI: Translated: 8.57; Mature: 8.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIGVFLDSLAVLIGGLCGAKFKHKIPQSINYPLTIIFGISAIVIGIVSCIKLKSLPAVI CCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LSLILGTLIGELMDLDTKVKNLFKKVIYKFNFKIYGDQEAYMSFYVIVAATFCLSGTNIF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHCCCHHH GAMNEAMTGDITILLSKAIMDIFAGAIFACTLGYAMNLIIVPQVLILGTFFYLAKCIMPL HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISANMLADFTAIGGILTFVIGLSIAEIKKIKVVNLLPALLIIFPISCLFELML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure PIGVFLDSLAVLIGGLCGAKFKHKIPQSINYPLTIIFGISAIVIGIVSCIKLKSLPAVI CHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LSLILGTLIGELMDLDTKVKNLFKKVIYKFNFKIYGDQEAYMSFYVIVAATFCLSGTNIF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHCCCHHH GAMNEAMTGDITILLSKAIMDIFAGAIFACTLGYAMNLIIVPQVLILGTFFYLAKCIMPL HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISANMLADFTAIGGILTFVIGLSIAEIKKIKVVNLLPALLIIFPISCLFELML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]