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The map label for this gene is sigI [H]

Identifier: 187935172

GI number: 187935172

Start: 2394036

End: 2394698

Strand: Reverse

Name: sigI [H]

Synonym: CLL_A2320

Alternate gene names: 187935172

Gene position: 2394698-2394036 (Counterclockwise)

Preceding gene: 187935577

Following gene: 187932688

Centisome position: 63.01

GC content: 27.9

Gene sequence:

>663_bases
ATGCTCGAATGTGTTTTAGAAGATTTAAATATTGGACAAGACCTTGATGTGAACCAATTAATAGAACAACATATGCCTTT
TATAATTAAAAGCATATCTGATGTTACTGGTAAATATGTGTCTTGTGAAAATGATGAAGAACTAAGTATTGCATTACTTG
CATTTTGTGAGGCTGTTGAAAGATATGAGAAAGATAAAGGTTATTTCTTGCCATTTGCAAAGCTTGTTATATCAAGTAGA
ATTAAAAATTATTTAAAAAGCCAAAATAAACACTCATGTTCATCTCTTGAAGAACTAGTTGAAAAAGGAATAGAAATTCA
AGATGAATATTTAGAAGAAGAGGATAATGGATTATTAGTTGATGACATAAATATATTAAAGTCAGAAATAATGCTATATG
GCTTTACATTTGAAGATTTAGTGGAAGAAGCACCTAAGCAAAGAGCAACACGAGAAAATGCTATGAATTTAGCAAAGCAA
ATAAGCGAAGTAGAAGAACTAACAACTTTTATGGAGATTAAAAAAAGATTACCAATCAAGAAAATTGTACTTAGATTTTC
TGTTACTGAAAAAGTAGTGAAACGAAGTAAAAAGTTTATAATTTCAGTAGTAATTATATTTAAGAAAAATCTTAAGACAC
TAAAAAATTGGATCAGAAAGTAG

Upstream 100 bases:

>100_bases
AATGTATTATATTTTAGAAAATTTTATTTATTGGAAATAAAAAGTACCGAAAATACTAATATTTTTTGTATATAATAATG
AACAGGAAGGGAGCTTAAAT

Downstream 100 bases:

>100_bases
GTGATAATGATGAGTAAGGGAATAATAATGGAAATAAAAAAAGAATATGCAATAGTAATGAATGATACGGGTAGCATAGA
GAGCATTAAAGTAAAAGATG

Product: RNA polymerase sigma factor SigI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MLECVLEDLNIGQDLDVNQLIEQHMPFIIKSISDVTGKYVSCENDEELSIALLAFCEAVERYEKDKGYFLPFAKLVISSR
IKNYLKSQNKHSCSSLEELVEKGIEIQDEYLEEEDNGLLVDDINILKSEIMLYGFTFEDLVEEAPKQRATRENAMNLAKQ
ISEVEELTTFMEIKKRLPIKKIVLRFSVTEKVVKRSKKFIISVVIIFKKNLKTLKNWIRK

Sequences:

>Translated_220_residues
MLECVLEDLNIGQDLDVNQLIEQHMPFIIKSISDVTGKYVSCENDEELSIALLAFCEAVERYEKDKGYFLPFAKLVISSR
IKNYLKSQNKHSCSSLEELVEKGIEIQDEYLEEEDNGLLVDDINILKSEIMLYGFTFEDLVEEAPKQRATRENAMNLAKQ
ISEVEELTTFMEIKKRLPIKKIVLRFSVTEKVVKRSKKFIISVVIIFKKNLKTLKNWIRK
>Mature_220_residues
MLECVLEDLNIGQDLDVNQLIEQHMPFIIKSISDVTGKYVSCENDEELSIALLAFCEAVERYEKDKGYFLPFAKLVISSR
IKNYLKSQNKHSCSSLEELVEKGIEIQDEYLEEEDNGLLVDDINILKSEIMLYGFTFEDLVEEAPKQRATRENAMNLAKQ
ISEVEELTTFMEIKKRLPIKKIVLRFSVTEKVVKRSKKFIISVVIIFKKNLKTLKNWIRK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor plays a role in survival at low temperatures and could be involved in heat shock stress response, posi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014244
- InterPro:   IPR007627
- InterPro:   IPR013325 [H]

Pfam domain/function: PF04542 Sigma70_r2 [H]

EC number: NA

Molecular weight: Translated: 25574; Mature: 25574

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLECVLEDLNIGQDLDVNQLIEQHMPFIIKSISDVTGKYVSCENDEELSIALLAFCEAVE
CHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
RYEKDKGYFLPFAKLVISSRIKNYLKSQNKHSCSSLEELVEKGIEIQDEYLEEEDNGLLV
HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCEEE
DDINILKSEIMLYGFTFEDLVEEAPKQRATRENAMNLAKQISEVEELTTFMEIKKRLPIK
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
KIVLRFSVTEKVVKRSKKFIISVVIIFKKNLKTLKNWIRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLECVLEDLNIGQDLDVNQLIEQHMPFIIKSISDVTGKYVSCENDEELSIALLAFCEAVE
CHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
RYEKDKGYFLPFAKLVISSRIKNYLKSQNKHSCSSLEELVEKGIEIQDEYLEEEDNGLLV
HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCEEE
DDINILKSEIMLYGFTFEDLVEEAPKQRATRENAMNLAKQISEVEELTTFMEIKKRLPIK
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
KIVLRFSVTEKVVKRSKKFIISVVIIFKKNLKTLKNWIRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]