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The map label for this gene is ybcS [C]

Identifier: 187934891

GI number: 187934891

Start: 1987085

End: 1987876

Strand: Reverse

Name: ybcS [C]

Synonym: CLL_A1888

Alternate gene names: 187934891

Gene position: 1987876-1987085 (Counterclockwise)

Preceding gene: 187934042

Following gene: 187934615

Centisome position: 52.31

GC content: 32.7

Gene sequence:

>792_bases
ATGTCACAATGGAAATGGTGTGTACAAGGTAAAGATGGAAAGGTTACTAAAGGATGGTATGAAGATAATGGAACTTGGTA
CTATTTAAATAATGAAGGTATCATGCAAACAGGATGGCTACAGGATAAAGATGGTCGATGGTATTACCTAGATTCTAATG
GAGCTATGCAAACAGGATGGCTAAAAGATAACGGTAAATGGTATTACTTAGAGCCTAATAGTACAGGATATAAAGGAGAA
ATGTATGGTAATCGTACAGCTATTATAGATGGAAAGTCTTATAGTTTTGATCCTACTGGTGTATGGATAGAAGATAGTTT
AGTATCAGATAAGTGTATTAATTTTATAAAATCTTGGGAAGGATTCGAAAAGGAAGGAAAAAAATACTATGATTGTGTTG
GAGTTTTAACACAAGGATATGGAATGACTGGTAAGGAAATAGAAAATTTACCTGACCAAATATCTGAATGTGAAGCTACT
AAATTATTAAAAGAATGGATCAATAAAAAGTATGCCCCAGTAGTAAAGAAAGATTTAGATTCTAAAGGCGTTTGCTTAAA
ACAACATGAATTTGATGCATTGGTAAGCTTTGCATACAATTGTGGAACAGCAGGTCTTTTAGACTCAACATTATATAAAA
ATGTGTGCACTGGAATAAGAAATAAAGATACAATTACATCTAACTTTCAAGCATGGAGTAATGGTGGAGGTAAAAGAATA
GAAGGACTTTACAGGCGTAGAACTAAAGAAGCAGCTATGTTTTTAAATGGAGATTATACATGTAATGTATAG

Upstream 100 bases:

>100_bases
ATAGCTTTTTATTTTAGTAAAGATAGAAAAGAAATTAAAGAGTAATTTAGGTAGCGTTTTTAGCTACCTTTTTTCTTTAT
ATTAATAAGGAGGAGATTAT

Downstream 100 bases:

>100_bases
AATAATTAATATTAAGGAACAATTAATTGCAAAATAGATATATTAATAGTATGACACAGGTTCTAGTGTCGTGTAAGTTG
TCGTATAGAAGTCAATATTT

Product: collagenolytic protease

Products: Hydrolysed Peptidoglycan; Chitodextrin [C]

Alternate protein names: Phage Related Lysozyme; Lysozyme; Surface Protein PspA; Phage-Related Lysozyme; Phage Lysozyme; Collagenolytic Protease; Pneumococcal Surface Protein A; Cell Wall Hydrolase/Autolysin; Glycoside Hydrolase Family; Surface Protein A; Integrin-Like Repeat-Containing Lysozyme; Gifsy-2 Prophage Lysozyme; SCP-Like Extracellular; Endo-Beta-N-Acetylglucosaminidase; Surface Protective Antigen SpaB; Protective Antigen SpaA-Like Protein; Glycoside Hydrolase Family 3 Protein; Dipeptidase; CHAP Domain-Containing Protein; Glycosyl Hydrolase Family; Cell Wall Surface Anchor Protein; Cell Wall/Surface Repeat-Containing Protein; SH3 Type 3 Domain-Containing Protein

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MSQWKWCVQGKDGKVTKGWYEDNGTWYYLNNEGIMQTGWLQDKDGRWYYLDSNGAMQTGWLKDNGKWYYLEPNSTGYKGE
MYGNRTAIIDGKSYSFDPTGVWIEDSLVSDKCINFIKSWEGFEKEGKKYYDCVGVLTQGYGMTGKEIENLPDQISECEAT
KLLKEWINKKYAPVVKKDLDSKGVCLKQHEFDALVSFAYNCGTAGLLDSTLYKNVCTGIRNKDTITSNFQAWSNGGGKRI
EGLYRRRTKEAAMFLNGDYTCNV

Sequences:

>Translated_263_residues
MSQWKWCVQGKDGKVTKGWYEDNGTWYYLNNEGIMQTGWLQDKDGRWYYLDSNGAMQTGWLKDNGKWYYLEPNSTGYKGE
MYGNRTAIIDGKSYSFDPTGVWIEDSLVSDKCINFIKSWEGFEKEGKKYYDCVGVLTQGYGMTGKEIENLPDQISECEAT
KLLKEWINKKYAPVVKKDLDSKGVCLKQHEFDALVSFAYNCGTAGLLDSTLYKNVCTGIRNKDTITSNFQAWSNGGGKRI
EGLYRRRTKEAAMFLNGDYTCNV
>Mature_262_residues
SQWKWCVQGKDGKVTKGWYEDNGTWYYLNNEGIMQTGWLQDKDGRWYYLDSNGAMQTGWLKDNGKWYYLEPNSTGYKGEM
YGNRTAIIDGKSYSFDPTGVWIEDSLVSDKCINFIKSWEGFEKEGKKYYDCVGVLTQGYGMTGKEIENLPDQISECEATK
LLKEWINKKYAPVVKKDLDSKGVCLKQHEFDALVSFAYNCGTAGLLDSTLYKNVCTGIRNKDTITSNFQAWSNGGGKRIE
GLYRRRTKEAAMFLNGDYTCNV

Specific function: Essential For Lysis Of Bacterial Cell Wall, By Showing Cell Wall Hydrolyzing Activity (By Similarity). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.2.1.17 [C]

Molecular weight: Translated: 30087; Mature: 29956

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQWKWCVQGKDGKVTKGWYEDNGTWYYLNNEGIMQTGWLQDKDGRWYYLDSNGAMQTGW
CCCCEEEEECCCCCEEECEECCCCEEEEECCCCEEEECCEECCCCCEEEECCCCCEEECE
LKDNGKWYYLEPNSTGYKGEMYGNRTAIIDGKSYSFDPTGVWIEDSLVSDKCINFIKSWE
EECCCEEEEECCCCCCCCCEECCCEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHCC
GFEKEGKKYYDCVGVLTQGYGMTGKEIENLPDQISECEATKLLKEWINKKYAPVVKKDLD
CHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC
SKGVCLKQHEFDALVSFAYNCGTAGLLDSTLYKNVCTGIRNKDTITSNFQAWSNGGGKRI
CCCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCHHH
EGLYRRRTKEAAMFLNGDYTCNV
HHHHHHHHHHHEEEECCCEEECC
>Mature Secondary Structure 
SQWKWCVQGKDGKVTKGWYEDNGTWYYLNNEGIMQTGWLQDKDGRWYYLDSNGAMQTGW
CCCEEEEECCCCCEEECEECCCCEEEEECCCCEEEECCEECCCCCEEEECCCCCEEECE
LKDNGKWYYLEPNSTGYKGEMYGNRTAIIDGKSYSFDPTGVWIEDSLVSDKCINFIKSWE
EECCCEEEEECCCCCCCCCEECCCEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHCC
GFEKEGKKYYDCVGVLTQGYGMTGKEIENLPDQISECEATKLLKEWINKKYAPVVKKDLD
CHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC
SKGVCLKQHEFDALVSFAYNCGTAGLLDSTLYKNVCTGIRNKDTITSNFQAWSNGGGKRI
CCCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCHHH
EGLYRRRTKEAAMFLNGDYTCNV
HHHHHHHHHHHEEEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Peptidoglycan (N-acetylmuraminic acid and N-acetyl-D-glucosamine Residues); Chitodextrin (N-acetyl-D-glucosamine residues) [C]

Specific reaction: Hydrolysis of beta-linkage between N-acetylmuraminic acid and N-acetyl- D-glucosamine residues in peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrin [C]

General reaction: O-Glycosyl bond hydrolysis; glycosyltransfer to saccharides other alcohols and H2O [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA