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The map label for this gene is ydiC [H]

Identifier: 187934549

GI number: 187934549

Start: 526639

End: 527355

Strand: Reverse

Name: ydiC [H]

Synonym: CLL_A0531

Alternate gene names: 187934549

Gene position: 527355-526639 (Counterclockwise)

Preceding gene: 187935564

Following gene: 187935092

Centisome position: 13.88

GC content: 29.29

Gene sequence:

>717_bases
ATGATTATACTAAGTATAGATTCATCTTCAAAAGTTGCAACTGCTGCTTTACTTGAAGATGGTAATTTACTAGGAGAAAT
AACTTTAAATAATAAAAAAGAGCATTCTACTATATTAATGACTTTAGTAGAAAATTTATTAGATAATTGTAATTTGGATA
TTGATTCTATAGATGGATTTGTAGTATCTAAAGGACCTGGTTCTTTTACAGGTTTAAGAATTGGAATGGCTACAATTAAA
GGATTAAGCTTTGGAGGAAATAAACCTTATGTAAGTATTTCTAGCCTTGATGCACTTGCATATAGCATTGCTCCATTTAA
CGGTATAATCTGCCCTGTAATGGATGCATTAAGAAACAATGTCTATACTGCTTTATACAAATCTTGTAATGGAAAATTAG
AACAAATAATGGATTACTCTGCTCTTGATATAAATGAGCTAGTTGACATGCTTAATGAAAAAGGAGAAAATGTTATGTTC
ATTGGTGATGGACTTAATAATACCAAGGAATACATATTAGAAAATTGTAATAATTGTTTCTTTCCACCAAATCATCTTAA
TTTAGTTAGAGCTTCTTCATTGGGTGAATTAGGACTACTAAAACTAAAAAATGGTGAATATGATGATTCTAACTCTGCTC
CATTTTATTTAAAAAAACCTCAAGCTGAGAGGGAATATGAAAAAAGGATGAAGTTAAAAAGTGAAACTAACAACTAG

Upstream 100 bases:

>100_bases
ATATAAATATAGAAAAAGATTTAGAAAAAGGTGATAATTATAGGAAGATAATATTAACACCTTATGGGGAAAAATATGAT
TATATAAAGGAGTTAAAAAT

Downstream 100 bases:

>100_bases
TTTAATGACTGAAACTGATATTGATGCAGTTTTAGAAATTAGCTTATTAAGTTTCCCTACATCTTGGAGTAAAGAATCAT
ATATTCAAGAATTAGCAAAT

Product: glycoprotease family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MIILSIDSSSKVATAALLEDGNLLGEITLNNKKEHSTILMTLVENLLDNCNLDIDSIDGFVVSKGPGSFTGLRIGMATIK
GLSFGGNKPYVSISSLDALAYSIAPFNGIICPVMDALRNNVYTALYKSCNGKLEQIMDYSALDINELVDMLNEKGENVMF
IGDGLNNTKEYILENCNNCFFPPNHLNLVRASSLGELGLLKLKNGEYDDSNSAPFYLKKPQAEREYEKRMKLKSETNN

Sequences:

>Translated_238_residues
MIILSIDSSSKVATAALLEDGNLLGEITLNNKKEHSTILMTLVENLLDNCNLDIDSIDGFVVSKGPGSFTGLRIGMATIK
GLSFGGNKPYVSISSLDALAYSIAPFNGIICPVMDALRNNVYTALYKSCNGKLEQIMDYSALDINELVDMLNEKGENVMF
IGDGLNNTKEYILENCNNCFFPPNHLNLVRASSLGELGLLKLKNGEYDDSNSAPFYLKKPQAEREYEKRMKLKSETNN
>Mature_238_residues
MIILSIDSSSKVATAALLEDGNLLGEITLNNKKEHSTILMTLVENLLDNCNLDIDSIDGFVVSKGPGSFTGLRIGMATIK
GLSFGGNKPYVSISSLDALAYSIAPFNGIICPVMDALRNNVYTALYKSCNGKLEQIMDYSALDINELVDMLNEKGENVMF
IGDGLNNTKEYILENCNNCFFPPNHLNLVRASSLGELGLLKLKNGEYDDSNSAPFYLKKPQAEREYEKRMKLKSETNN

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=129, Percent_Identity=31.0077519379845, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 26165; Mature: 26165

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIILSIDSSSKVATAALLEDGNLLGEITLNNKKEHSTILMTLVENLLDNCNLDIDSIDGF
CEEEEECCCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEECCCCE
VVSKGPGSFTGLRIGMATIKGLSFGGNKPYVSISSLDALAYSIAPFNGIICPVMDALRNN
EEECCCCCCCHHEEHHHHHHEECCCCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHH
VYTALYKSCNGKLEQIMDYSALDINELVDMLNEKGENVMFIGDGLNNTKEYILENCNNCF
HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCC
FPPNHLNLVRASSLGELGLLKLKNGEYDDSNSAPFYLKKPQAEREYEKRMKLKSETNN
CCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIILSIDSSSKVATAALLEDGNLLGEITLNNKKEHSTILMTLVENLLDNCNLDIDSIDGF
CEEEEECCCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEECCCCE
VVSKGPGSFTGLRIGMATIKGLSFGGNKPYVSISSLDALAYSIAPFNGIICPVMDALRNN
EEECCCCCCCHHEEHHHHHHEECCCCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHH
VYTALYKSCNGKLEQIMDYSALDINELVDMLNEKGENVMFIGDGLNNTKEYILENCNNCF
HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCC
FPPNHLNLVRASSLGELGLLKLKNGEYDDSNSAPFYLKKPQAEREYEKRMKLKSETNN
CCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]