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The map label for this gene is abrB [H]

Identifier: 187934109

GI number: 187934109

Start: 2022798

End: 2023052

Strand: Reverse

Name: abrB [H]

Synonym: CLL_A1946

Alternate gene names: 187934109

Gene position: 2023052-2022798 (Counterclockwise)

Preceding gene: 187933342

Following gene: 187933077

Centisome position: 53.23

GC content: 29.41

Gene sequence:

>255_bases
ATGAAATCAACAGGAATTGTAAGAAAAATGGACGAGTTAGGAAGGGTAGTAATACCAATGGAACTAAGAAGGAGCTTAAA
TATTGCTGAAAAGGATGCATTAGAAATTTATGTAGAAGGAGATAACATAATTTTAAAAAAGTATACTCCTGGATGTTTTA
TCTGCCAAGAGATTAATAATTTGGTTATTATTCCGGATTCAAAAGTTAAGATTTGTCCAAAATGTTTAGCTAAATTAAGA
AGTAAGCTACTTTAA

Upstream 100 bases:

>100_bases
ATTAAGTTATTTTTAAAATAATTCAGCATATTTTCACCCCCTTTCAACATAATTTTACCATATGTTAGGGGAAATAAAAA
ATATTAGGAGGAATGTAAAA

Downstream 100 bases:

>100_bases
GGAGGATTAACATGGAAGATGTAAATTTGTATGTAAACTTGCTTTCTAAGAAGAGACATAAGGTATCTATTGTAAAGAGA
ATAGTAAGAAGAGTTCTAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 84; Mature: 84

Protein sequence:

>84_residues
MKSTGIVRKMDELGRVVIPMELRRSLNIAEKDALEIYVEGDNIILKKYTPGCFICQEINNLVIIPDSKVKICPKCLAKLR
SKLL

Sequences:

>Translated_84_residues
MKSTGIVRKMDELGRVVIPMELRRSLNIAEKDALEIYVEGDNIILKKYTPGCFICQEINNLVIIPDSKVKICPKCLAKLR
SKLL
>Mature_84_residues
MKSTGIVRKMDELGRVVIPMELRRSLNIAEKDALEIYVEGDNIILKKYTPGCFICQEINNLVIIPDSKVKICPKCLAKLR
SKLL

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 9532; Mature: 9532

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
4.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTGIVRKMDELGRVVIPMELRRSLNIAEKDALEIYVEGDNIILKKYTPGCFICQEINN
CCCCCHHHHHHHCCCEEECHHHHHCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCC
LVIIPDSKVKICPKCLAKLRSKLL
EEEECCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKSTGIVRKMDELGRVVIPMELRRSLNIAEKDALEIYVEGDNIILKKYTPGCFICQEINN
CCCCCHHHHHHHCCCEEECHHHHHCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCC
LVIIPDSKVKICPKCLAKLRSKLL
EEEECCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]