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The map label for this gene is ybdM [H]

Identifier: 187934012

GI number: 187934012

Start: 2882302

End: 2883018

Strand: Reverse

Name: ybdM [H]

Synonym: CLL_A2801

Alternate gene names: 187934012

Gene position: 2883018-2882302 (Counterclockwise)

Preceding gene: 187934178

Following gene: 187932899

Centisome position: 75.86

GC content: 23.01

Gene sequence:

>717_bases
ATGGATAGGTATTACAAAACAGATGAAATTGTAAATGGATATTATATAAAAGAAATAATTGGTGAAGGTAGATATGGCAT
TGCTTATTTTGCTATAAATAATAAAAATCAAAAATGTGTAATAAAACAATTAAAAAAAGACTCTCTTGAAGAAACTAGAG
AAAAATTATTTTATGAAGAAAAGATATTAAAGTCATTAGATTATGCTAGTTTTCCTAAATTTATATCCACATTTAAAGAT
GAGGATAGAGAAGGGTATATACTAGAATATATTGAAGGTAAAGTTTTTGAAGATTTATTAACTAGAGATGGGTATGAGTT
TAAAAAGAATGAAATTTATGAAGTTTGCACTAAATTATTAAATTTAATAGAATTATTGCAAAATAATAAAATAGTTCACA
GAGATATTAGACTTCCTAATGTTATAATAAGAGAAAATAAAGAGTTGGTTTTAATAGATTTTGGATTAGCAAGGATTATT
GATAATAAAAGGTATGTTGAAGCTATGGATTATTGGTTTTTAGCAGACTTTTTAATTCATTTGCATTATTCATCTTATGT
AGAAAACGAATTACCAGAAAGACCTTGGTATGAAGAATTAGATTTAAATTTAGAAGAAAAAATATTTTTGAAAAAACTTA
TGGGACTTGATAGTGAATATAAAAATATTACAGAAATAAGAAATCAACTAAAAAAATTAAAGATACAGTTTGATTAA

Upstream 100 bases:

>100_bases
ATCAAGAAGTAATTCAAGTCAATCATATAGTAGGTCAAGAAGTAATTCAAGTCAATCATATAGTAGATAATAATATTTTA
TAACAATTGAGATTTAGAAA

Downstream 100 bases:

>100_bases
TATAATGACCATGCAATTTTAAAAAATTAATATTGCATGGTTAATTTTAAATGAAAAAGAGATTAAACAAAGGAGGAAAA
ACATTTGATTAACTCAGATA

Product: serine/threonine protein kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MDRYYKTDEIVNGYYIKEIIGEGRYGIAYFAINNKNQKCVIKQLKKDSLEETREKLFYEEKILKSLDYASFPKFISTFKD
EDREGYILEYIEGKVFEDLLTRDGYEFKKNEIYEVCTKLLNLIELLQNNKIVHRDIRLPNVIIRENKELVLIDFGLARII
DNKRYVEAMDYWFLADFLIHLHYSSYVENELPERPWYEELDLNLEEKIFLKKLMGLDSEYKNITEIRNQLKKLKIQFD

Sequences:

>Translated_238_residues
MDRYYKTDEIVNGYYIKEIIGEGRYGIAYFAINNKNQKCVIKQLKKDSLEETREKLFYEEKILKSLDYASFPKFISTFKD
EDREGYILEYIEGKVFEDLLTRDGYEFKKNEIYEVCTKLLNLIELLQNNKIVHRDIRLPNVIIRENKELVLIDFGLARII
DNKRYVEAMDYWFLADFLIHLHYSSYVENELPERPWYEELDLNLEEKIFLKKLMGLDSEYKNITEIRNQLKKLKIQFD
>Mature_238_residues
MDRYYKTDEIVNGYYIKEIIGEGRYGIAYFAINNKNQKCVIKQLKKDSLEETREKLFYEEKILKSLDYASFPKFISTFKD
EDREGYILEYIEGKVFEDLLTRDGYEFKKNEIYEVCTKLLNLIELLQNNKIVHRDIRLPNVIIRENKELVLIDFGLARII
DNKRYVEAMDYWFLADFLIHLHYSSYVENELPERPWYEELDLNLEEKIFLKKLMGLDSEYKNITEIRNQLKKLKIQFD

Specific function: Unknown

COG id: COG0515

COG function: function code RTKL; Serine/threonine protein kinase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 protein kinase domain [H]

Homologues:

Organism=Homo sapiens, GI4505001, Length=169, Percent_Identity=26.6272189349112, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI5031869, Length=166, Percent_Identity=26.5060240963855, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI8051618, Length=166, Percent_Identity=26.5060240963855, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI73390140, Length=166, Percent_Identity=26.5060240963855, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI83367069, Length=163, Percent_Identity=28.8343558282209, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI4507281, Length=163, Percent_Identity=28.8343558282209, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI63998898, Length=174, Percent_Identity=27.0114942528736, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI29826329, Length=173, Percent_Identity=23.6994219653179, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI24308191, Length=173, Percent_Identity=23.6994219653179, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI62422563, Length=175, Percent_Identity=24, Blast_Score=64, Evalue=8e-11,
Organism=Homo sapiens, GI62422561, Length=175, Percent_Identity=24, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI25143958, Length=172, Percent_Identity=28.4883720930233, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193208795, Length=156, Percent_Identity=25.6410256410256, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193208793, Length=156, Percent_Identity=25.6410256410256, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI133951926, Length=177, Percent_Identity=25.4237288135593, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI133951912, Length=177, Percent_Identity=25.4237288135593, Blast_Score=68, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6319328, Length=164, Percent_Identity=28.6585365853659, Blast_Score=69, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6323643, Length=151, Percent_Identity=27.1523178807947, Blast_Score=65, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24647440, Length=187, Percent_Identity=22.9946524064171, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24647442, Length=187, Percent_Identity=22.9946524064171, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011009
- InterPro:   IPR000719
- InterPro:   IPR017441
- InterPro:   IPR017442 [H]

Pfam domain/function: PF00069 Pkinase [H]

EC number: =2.7.11.1 [H]

Molecular weight: Translated: 28798; Mature: 28798

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS00107 PROTEIN_KINASE_ATP ; PS00109 PROTEIN_KINASE_TYR ; PS50011 PROTEIN_KINASE_DOM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRYYKTDEIVNGYYIKEIIGEGRYGIAYFAINNKNQKCVIKQLKKDSLEETREKLFYEE
CCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
KILKSLDYASFPKFISTFKDEDREGYILEYIEGKVFEDLLTRDGYEFKKNEIYEVCTKLL
HHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
NLIELLQNNKIVHRDIRLPNVIIRENKELVLIDFGLARIIDNKRYVEAMDYWFLADFLIH
HHHHHHHCCCEEEECCCCCCEEEECCCCEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHH
LHYSSYVENELPERPWYEELDLNLEEKIFLKKLMGLDSEYKNITEIRNQLKKLKIQFD
HHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDRYYKTDEIVNGYYIKEIIGEGRYGIAYFAINNKNQKCVIKQLKKDSLEETREKLFYEE
CCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
KILKSLDYASFPKFISTFKDEDREGYILEYIEGKVFEDLLTRDGYEFKKNEIYEVCTKLL
HHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
NLIELLQNNKIVHRDIRLPNVIIRENKELVLIDFGLARIIDNKRYVEAMDYWFLADFLIH
HHHHHHHCCCEEEECCCCCCEEEECCCCEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHH
LHYSSYVENELPERPWYEELDLNLEEKIFLKKLMGLDSEYKNITEIRNQLKKLKIQFD
HHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]