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The map label for this gene is yijO [C]

Identifier: 187933831

GI number: 187933831

Start: 2128756

End: 2129943

Strand: Reverse

Name: yijO [C]

Synonym: CLL_A2034

Alternate gene names: 187933831

Gene position: 2129943-2128756 (Counterclockwise)

Preceding gene: 187933100

Following gene: 187933191

Centisome position: 56.05

GC content: 28.7

Gene sequence:

>1188_bases
ATGGTATTAAGAGAAGAGATAATTAAAAATTTAAATTTACAAATAAAAATCAATAGTCATATTATTGGTGTTGCAACAGG
TGCTGGTGTTACGGCTAAATATGCTCAAAGAGGTGGAGCTGATCTAGTGCTTACTCTTAATTCAGGAAGATTTAGACAGA
TGGGAAGAAGCTCACTTGCAGGGATATTGCCATTTGCTAATAGCAATGATATGGTAATGGAATTTGCATTAAGGGAAGTG
GTTCCACTTATAAAAGATATTCCTGTTATTTTTGGATTAAATGCAACAGATCCAACAATAGACTTAGAAGAATATATAGA
TGATATAAAAAATAAGGGGTTTTCAGGAATTAATAATTATCCAACTGTAGGAATAATTGATGGAATATTTGGGAAGGTAT
TGGAAGAAGAGGGATGCAGTTACAAATTAGAAGTTGAGGCTATTAAAATTGCTCATAAAAAGAACTTATTTACTATAGCA
TTTGTTTTTAGTAAAGAACAAGCAAAAGATATGTTAGATGCAGGAGCAGATATTATATGTGTTCATTTAGGATTAACAGG
AGGCGGAATGCTTGGAGCTAAAAAGATATTATCTTTAGAGGCAGCTAAGGAAAAGGCAAAATTAATTTTTGATTTATGTG
ATAAAATTAGACCAAATGTAATTAAGATGATATATGGAGGACCTATTAAAACACCAGTAGACGTTCAATATATGTATAAC
AATTGCAATACTATGGGATATATAGGTGGATCAGCTTTCGAAAGGATACCAACTGAAAAATATATAACTAATATAACTAG
AGAGTTTAAGTATTCAGGTAATTTAGAAAAAGATGATTTTTTAAATAAAATGTTAGATGGAATAACAAAGCATTATGACT
ATGTAGAATTTGTAAAAGAATATGTATCTAAAAACTACATGAATAATATATCTTTTTTAGAATTAGCTATGGTTGCAAAT
ATTTCTAGAACACATTTAAGTAGTCTTTTTAAAAAAGAAGTTGGATGTAGCTTCCCACAATATTTAGTTAAATTTAGAAT
GAATAAAGCAACAGAAATAATAAAAAAAGAAAATATACAATTATCAGAGGTTGCAGAGTTAGTCGGATATGATGATTATG
CACATTTTAGTAAGATGTTTAAAAAATATATAGGAAAATCACCAAAAATATACAGAGAAAGTACATAA

Upstream 100 bases:

>100_bases
ATTTAAAGATAAAAAGTTGGTTTTCTATTAGACAACATATTAGGATTAGATTTAAATATAGCAATTTAATTTATTAGAAT
TAGGTAATGAGGTATAAAAT

Downstream 100 bases:

>100_bases
ACACAAAATTAAAGTACATAACTACATTTACCGCGAATTAGAGAAACGTTATCATTAATTTATAAGTTGTGATAACGTTT
TTTAAAAACTAAAAATTATA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MVLREEIIKNLNLQIKINSHIIGVATGAGVTAKYAQRGGADLVLTLNSGRFRQMGRSSLAGILPFANSNDMVMEFALREV
VPLIKDIPVIFGLNATDPTIDLEEYIDDIKNKGFSGINNYPTVGIIDGIFGKVLEEEGCSYKLEVEAIKIAHKKNLFTIA
FVFSKEQAKDMLDAGADIICVHLGLTGGGMLGAKKILSLEAAKEKAKLIFDLCDKIRPNVIKMIYGGPIKTPVDVQYMYN
NCNTMGYIGGSAFERIPTEKYITNITREFKYSGNLEKDDFLNKMLDGITKHYDYVEFVKEYVSKNYMNNISFLELAMVAN
ISRTHLSSLFKKEVGCSFPQYLVKFRMNKATEIIKKENIQLSEVAELVGYDDYAHFSKMFKKYIGKSPKIYREST

Sequences:

>Translated_395_residues
MVLREEIIKNLNLQIKINSHIIGVATGAGVTAKYAQRGGADLVLTLNSGRFRQMGRSSLAGILPFANSNDMVMEFALREV
VPLIKDIPVIFGLNATDPTIDLEEYIDDIKNKGFSGINNYPTVGIIDGIFGKVLEEEGCSYKLEVEAIKIAHKKNLFTIA
FVFSKEQAKDMLDAGADIICVHLGLTGGGMLGAKKILSLEAAKEKAKLIFDLCDKIRPNVIKMIYGGPIKTPVDVQYMYN
NCNTMGYIGGSAFERIPTEKYITNITREFKYSGNLEKDDFLNKMLDGITKHYDYVEFVKEYVSKNYMNNISFLELAMVAN
ISRTHLSSLFKKEVGCSFPQYLVKFRMNKATEIIKKENIQLSEVAELVGYDDYAHFSKMFKKYIGKSPKIYREST
>Mature_395_residues
MVLREEIIKNLNLQIKINSHIIGVATGAGVTAKYAQRGGADLVLTLNSGRFRQMGRSSLAGILPFANSNDMVMEFALREV
VPLIKDIPVIFGLNATDPTIDLEEYIDDIKNKGFSGINNYPTVGIIDGIFGKVLEEEGCSYKLEVEAIKIAHKKNLFTIA
FVFSKEQAKDMLDAGADIICVHLGLTGGGMLGAKKILSLEAAKEKAKLIFDLCDKIRPNVIKMIYGGPIKTPVDVQYMYN
NCNTMGYIGGSAFERIPTEKYITNITREFKYSGNLEKDDFLNKMLDGITKHYDYVEFVKEYVSKNYMNNISFLELAMVAN
ISRTHLSSLFKKEVGCSFPQYLVKFRMNKATEIIKKENIQLSEVAELVGYDDYAHFSKMFKKYIGKSPKIYREST

Specific function: Unknown

COG id: COG5564

COG function: function code R; Predicted TIM-barrel enzyme, possibly a dioxygenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR009215 [H]

Pfam domain/function: PF09370 TIM-br_sig_trns [H]

EC number: NA

Molecular weight: Translated: 44335; Mature: 44335

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLREEIIKNLNLQIKINSHIIGVATGAGVTAKYAQRGGADLVLTLNSGRFRQMGRSSLA
CCCHHHHHHCCCEEEEECCEEEEEECCCCCHHHHHHCCCCEEEEEECCCHHHHHHHHHHH
GILPFANSNDMVMEFALREVVPLIKDIPVIFGLNATDPTIDLEEYIDDIKNKGFSGINNY
EEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCC
PTVGIIDGIFGKVLEEEGCSYKLEVEAIKIAHKKNLFTIAFVFSKEQAKDMLDAGADIIC
CCHHHHHHHHHHHHHHCCCCEEEEEHEEEEHHHCCEEEEEEEECHHHHHHHHHCCCCEEE
VHLGLTGGGMLGAKKILSLEAAKEKAKLIFDLCDKIRPNVIKMIYGGPIKTPVDVQYMYN
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEC
NCNTMGYIGGSAFERIPTEKYITNITREFKYSGNLEKDDFLNKMLDGITKHYDYVEFVKE
CCCEEEECCCHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YVSKNYMNNISFLELAMVANISRTHLSSLFKKEVGCSFPQYLVKFRMNKATEIIKKENIQ
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
LSEVAELVGYDDYAHFSKMFKKYIGKSPKIYREST
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCEECCCC
>Mature Secondary Structure
MVLREEIIKNLNLQIKINSHIIGVATGAGVTAKYAQRGGADLVLTLNSGRFRQMGRSSLA
CCCHHHHHHCCCEEEEECCEEEEEECCCCCHHHHHHCCCCEEEEEECCCHHHHHHHHHHH
GILPFANSNDMVMEFALREVVPLIKDIPVIFGLNATDPTIDLEEYIDDIKNKGFSGINNY
EEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCC
PTVGIIDGIFGKVLEEEGCSYKLEVEAIKIAHKKNLFTIAFVFSKEQAKDMLDAGADIIC
CCHHHHHHHHHHHHHHCCCCEEEEEHEEEEHHHCCEEEEEEEECHHHHHHHHHCCCCEEE
VHLGLTGGGMLGAKKILSLEAAKEKAKLIFDLCDKIRPNVIKMIYGGPIKTPVDVQYMYN
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEC
NCNTMGYIGGSAFERIPTEKYITNITREFKYSGNLEKDDFLNKMLDGITKHYDYVEFVKE
CCCEEEECCCHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YVSKNYMNNISFLELAMVANISRTHLSSLFKKEVGCSFPQYLVKFRMNKATEIIKKENIQ
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
LSEVAELVGYDDYAHFSKMFKKYIGKSPKIYREST
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]