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The map label for this gene is araQ [H]

Identifier: 187933308

GI number: 187933308

Start: 2157412

End: 2158239

Strand: Reverse

Name: araQ [H]

Synonym: CLL_A2062

Alternate gene names: 187933308

Gene position: 2158239-2157412 (Counterclockwise)

Preceding gene: 187932367

Following gene: 187934817

Centisome position: 56.79

GC content: 28.99

Gene sequence:

>828_bases
ATGAAGACAAAAACAAAATTAAAAGGGATTTTTGTAATAGTAGCTACTATGATAATTTTAGGAATATCATTATTCCCTTA
CTATTATATGATAATTCAGTCATTTACGCCTTGGGATCAGATAGATAAAGTTATGATGCCTGACAGCTTTACTTTAAAAA
GTTATAGTTACTTATTTGGGGGTAGCGGTGGAGCTACAGCAGGAATGTGGATAAAATCATTAATTAATTCATTTATTGTA
TCAGTGCCAACAGCAGTTATTTCAGTAGTAATCGGATTATTAGTTGGTTACTCAGTTTCTAAAATGAATAAATTCAAAGG
TGAAAAATTCATAATGAATACTTTGTTATTCCAAATGTTTTTCCCTGTAATAATACTATTAGTACCTAGATATATAATAT
CAAAACCTTTGACCAATACATATTTAGGAATGATATTACCATTGTCAGTTTCAGTTTGGGGAATATTTATGTATATAAAC
TATTTTAAATCATTACCAAATGAAGTTTTTGAAGCGGCAAGAATAGATGGTGCATCAGAACTAAAAATACTTTGTAGTAT
AGGATTTCCTGTAGCTAAATCAGTTACGACTATAGTGTTTTTATCAACATTTATGACAAGATGGTCTGAACTTATGTGGG
ACATGCTAATATCACCTAAGATTGATATGCAAACATTAAATGTTCTAATATCAACACAATTCAAACCAATGGGTAATTTA
CCAGGTCCAATGTATGGAGCATCAGTAATATTAACTATACCGATAATAATAATGTTCTTATGTTTCTCAAAGCATTTTAA
AGAAGGAATTAACTTTATGTTAAAGTAA

Upstream 100 bases:

>100_bases
CAGTTCATATATTTATAACTATAAAAATAATCACATTTACAATGGGAAAAGTAAATAAAAAATATGGGATGTAAAATATA
ACACATTGGAGGTTATGAAT

Downstream 100 bases:

>100_bases
TTAGGAGGTAATTATGAATAATAAATTAAACGTAGTAAGAAGTGCAAAAAATCCATTAATAAAACCAAGTGATGTAAAGC
CAAGTAGAGAAGACTTTAAA

Product: sugar ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MKTKTKLKGIFVIVATMIILGISLFPYYYMIIQSFTPWDQIDKVMMPDSFTLKSYSYLFGGSGGATAGMWIKSLINSFIV
SVPTAVISVVIGLLVGYSVSKMNKFKGEKFIMNTLLFQMFFPVIILLVPRYIISKPLTNTYLGMILPLSVSVWGIFMYIN
YFKSLPNEVFEAARIDGASELKILCSIGFPVAKSVTTIVFLSTFMTRWSELMWDMLISPKIDMQTLNVLISTQFKPMGNL
PGPMYGASVILTIPIIIMFLCFSKHFKEGINFMLK

Sequences:

>Translated_275_residues
MKTKTKLKGIFVIVATMIILGISLFPYYYMIIQSFTPWDQIDKVMMPDSFTLKSYSYLFGGSGGATAGMWIKSLINSFIV
SVPTAVISVVIGLLVGYSVSKMNKFKGEKFIMNTLLFQMFFPVIILLVPRYIISKPLTNTYLGMILPLSVSVWGIFMYIN
YFKSLPNEVFEAARIDGASELKILCSIGFPVAKSVTTIVFLSTFMTRWSELMWDMLISPKIDMQTLNVLISTQFKPMGNL
PGPMYGASVILTIPIIIMFLCFSKHFKEGINFMLK
>Mature_275_residues
MKTKTKLKGIFVIVATMIILGISLFPYYYMIIQSFTPWDQIDKVMMPDSFTLKSYSYLFGGSGGATAGMWIKSLINSFIV
SVPTAVISVVIGLLVGYSVSKMNKFKGEKFIMNTLLFQMFFPVIILLVPRYIISKPLTNTYLGMILPLSVSVWGIFMYIN
YFKSLPNEVFEAARIDGASELKILCSIGFPVAKSVTTIVFLSTFMTRWSELMWDMLISPKIDMQTLNVLISTQFKPMGNL
PGPMYGASVILTIPIIIMFLCFSKHFKEGINFMLK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=228, Percent_Identity=28.9473684210526, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787571, Length=276, Percent_Identity=27.1739130434783, Blast_Score=81, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31001; Mature: 31001

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
6.9 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
6.9 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]