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The map label for this gene is hypD2 [H]

Identifier: 187933101

GI number: 187933101

Start: 2081259

End: 2082344

Strand: Reverse

Name: hypD2 [H]

Synonym: CLL_A2001

Alternate gene names: 187933101

Gene position: 2082344-2081259 (Counterclockwise)

Preceding gene: 187933842

Following gene: 187934487

Centisome position: 54.79

GC content: 28.45

Gene sequence:

>1086_bases
ATGGAGTTAATAAATAGATTTAATGATGTTAGTTTATGTAAAACATTATTAAAAGAAATAGAGAAAAATGCAATGGAAAA
GATAAATATAATGGAAGTGTGTGGAACTCATACAAGAAGTATATATGAGCTGGGAATAAATAAGTTATTACCTGAAAATA
TAAATTTATTAAGTGGACCTGGGTGTCCTATATGTGTAACTCCAGTAAATTATATTGATAATGCAATAAAGCTCTCAAAG
AAACCACAGACAATAATAGTTACATTTGGAGATATGATGAGAGTTCCAGGTAGCAGTAGTTCTTTAAGCGAAGAAAAAGC
TAAAGGAATGGATATTAGAATTATATATTCACCTCTAGATTCAATAAAAATAGCAGAAAAAAATAAAGATAAAGAAGTTA
TATTATTAGGAATTGGATTTGAAACCACAGCACCAATAATAGCGTTAACATTGAAGTATGCAAAGGCTAAGAAAATTAAT
AATTTTTCAGTGCTTCTTTCAATAAAAACTATGCCAAACACAATGAAAGAATTAGTACTAGATGGAAGAGCTAAGATAAA
TGGGTTTATATGTCCAGGGCATGTAGCAACAATAATAGGTGAAGAACCGTTTAATATTTTATCTATGGAGAGTAAACTTC
CTATGAGTATTTGTGGCTTTAAAGGAACGGAAATACTCGTAGGAATTCTTTCAATAGTTAAATTAGTAAATAATAATGAG
TATAAATGTGAAAATTTATATAGAGGGTTTGTTAAGAAAAAAGGAAATATTAAAGCTAAAGAATTAATAAATGAGGTTTT
TGAAATTTCAGATAGCGTATGGCGAGGTATGGGTACTATAAAACAAACAGGATTTGATTTTAAAAATGAATATAAAATTT
TTGATTCTACAAAGAAGTTTTTACTAAGACACAGAGAATTAAATTTAAATAATAACTGCATTTGTGGAGAGATATTACAA
GGCATAAGTAATCCAAGGGATTGTTTATCATTTGGAAAGTGTTGTACACCTGAAAATCCTATAGGACCATGTATGGTATC
TAACGAAGGAACTTGCAAGATAGTATATGATACAGTTTTAGTATAA

Upstream 100 bases:

>100_bases
AAAAATCCATTAGATGTTAATAATATTTTAAATATATTTACTTAGCTGGATATATTAAGACATAATTATAAAAATAGTTT
GATAAATTAGGTGATAGATT

Downstream 100 bases:

>100_bases
TAAAATATAAGTGTTTAAAGGGGCTTGGCATTCCAAGCCTTTATTTATGTATAGGAAAATATAAAATGGTAAAAGTGTTG
TCACAAAGTGAGTGTGGCGC

Product: hydrogenase isoenzymes formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MELINRFNDVSLCKTLLKEIEKNAMEKINIMEVCGTHTRSIYELGINKLLPENINLLSGPGCPICVTPVNYIDNAIKLSK
KPQTIIVTFGDMMRVPGSSSSLSEEKAKGMDIRIIYSPLDSIKIAEKNKDKEVILLGIGFETTAPIIALTLKYAKAKKIN
NFSVLLSIKTMPNTMKELVLDGRAKINGFICPGHVATIIGEEPFNILSMESKLPMSICGFKGTEILVGILSIVKLVNNNE
YKCENLYRGFVKKKGNIKAKELINEVFEISDSVWRGMGTIKQTGFDFKNEYKIFDSTKKFLLRHRELNLNNNCICGEILQ
GISNPRDCLSFGKCCTPENPIGPCMVSNEGTCKIVYDTVLV

Sequences:

>Translated_361_residues
MELINRFNDVSLCKTLLKEIEKNAMEKINIMEVCGTHTRSIYELGINKLLPENINLLSGPGCPICVTPVNYIDNAIKLSK
KPQTIIVTFGDMMRVPGSSSSLSEEKAKGMDIRIIYSPLDSIKIAEKNKDKEVILLGIGFETTAPIIALTLKYAKAKKIN
NFSVLLSIKTMPNTMKELVLDGRAKINGFICPGHVATIIGEEPFNILSMESKLPMSICGFKGTEILVGILSIVKLVNNNE
YKCENLYRGFVKKKGNIKAKELINEVFEISDSVWRGMGTIKQTGFDFKNEYKIFDSTKKFLLRHRELNLNNNCICGEILQ
GISNPRDCLSFGKCCTPENPIGPCMVSNEGTCKIVYDTVLV
>Mature_361_residues
MELINRFNDVSLCKTLLKEIEKNAMEKINIMEVCGTHTRSIYELGINKLLPENINLLSGPGCPICVTPVNYIDNAIKLSK
KPQTIIVTFGDMMRVPGSSSSLSEEKAKGMDIRIIYSPLDSIKIAEKNKDKEVILLGIGFETTAPIIALTLKYAKAKKIN
NFSVLLSIKTMPNTMKELVLDGRAKINGFICPGHVATIIGEEPFNILSMESKLPMSICGFKGTEILVGILSIVKLVNNNE
YKCENLYRGFVKKKGNIKAKELINEVFEISDSVWRGMGTIKQTGFDFKNEYKIFDSTKKFLLRHRELNLNNNCICGEILQ
GISNPRDCLSFGKCCTPENPIGPCMVSNEGTCKIVYDTVLV

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=357, Percent_Identity=36.9747899159664, Blast_Score=290, Evalue=9e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 40191; Mature: 40191

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELINRFNDVSLCKTLLKEIEKNAMEKINIMEVCGTHTRSIYELGINKLLPENINLLSGP
CCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEECCC
GCPICVTPVNYIDNAIKLSKKPQTIIVTFGDMMRVPGSSSSLSEEKAKGMDIRIIYSPLD
CCCEEECCHHHHHHHHHCCCCCCEEEEEECHHHCCCCCCCCCCHHHHCCCEEEEEECCCC
SIKIAEKNKDKEVILLGIGFETTAPIIALTLKYAKAKKINNFSVLLSIKTMPNTMKELVL
CEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHH
DGRAKINGFICPGHVATIIGEEPFNILSMESKLPMSICGFKGTEILVGILSIVKLVNNNE
CCCCCCCCEECCCHHEEEECCCCCCEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHCCCC
YKCENLYRGFVKKKGNIKAKELINEVFEISDSVWRGMGTIKQTGFDFKNEYKIFDSTKKF
CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCEEHHHHHHHH
LLRHRELNLNNNCICGEILQGISNPRDCLSFGKCCTPENPIGPCMVSNEGTCKIVYDTVL
HHHHHHCCCCCCEEHHHHHHHCCCHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEEEEEC
V
C
>Mature Secondary Structure
MELINRFNDVSLCKTLLKEIEKNAMEKINIMEVCGTHTRSIYELGINKLLPENINLLSGP
CCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEECCC
GCPICVTPVNYIDNAIKLSKKPQTIIVTFGDMMRVPGSSSSLSEEKAKGMDIRIIYSPLD
CCCEEECCHHHHHHHHHCCCCCCEEEEEECHHHCCCCCCCCCCHHHHCCCEEEEEECCCC
SIKIAEKNKDKEVILLGIGFETTAPIIALTLKYAKAKKINNFSVLLSIKTMPNTMKELVL
CEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHH
DGRAKINGFICPGHVATIIGEEPFNILSMESKLPMSICGFKGTEILVGILSIVKLVNNNE
CCCCCCCCEECCCHHEEEECCCCCCEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHCCCC
YKCENLYRGFVKKKGNIKAKELINEVFEISDSVWRGMGTIKQTGFDFKNEYKIFDSTKKF
CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCEEHHHHHHHH
LLRHRELNLNNNCICGEILQGISNPRDCLSFGKCCTPENPIGPCMVSNEGTCKIVYDTVL
HHHHHHCCCCCCEEHHHHHHHCCCHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEEEEEC
V
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275; 8510650 [H]