Click here to switch to the map view.

The map label for this gene is puuR [H]

Identifier: 187933000

GI number: 187933000

Start: 1006795

End: 1007334

Strand: Reverse

Name: puuR [H]

Synonym: CLL_A0997

Alternate gene names: 187933000

Gene position: 1007334-1006795 (Counterclockwise)

Preceding gene: 187935102

Following gene: 187934240

Centisome position: 26.51

GC content: 30.0

Gene sequence:

>540_bases
TTGCAAATTGGAGAAAAGATTCGTGTATTAAGAATGGAAAAACAATTAACCCAAGAAGAATTAGCAAATAGATGTGAGTT
ATCTAAGGGATTTATATCCCAACTTGAAAATGATTTAACGTCTCCATCAATTGCTACTTTAATGGACATACTTGAAATCC
TAGGAACTAATTTAAATGAGTTCTTTAGTGAAACAAAAGAAGAACAAGTTATATTTAGTAATGATGATATGTTTAAAACA
GATGATGAAGAACTAAAATATTCCTTAATGTGGCTTGTGCCTAATGCCCAAAAAAATGCCATGGAACCAATTATGATTAC
TATTGAGCCAGGTGGGCAATATATTGAGGAAGAACCACATGATGGTGAAGAGTTTGGTTATGTATTATCTGGAAGCATTT
ATCTACATTTAGGAAAAAGAAAACTAAAAGTAAAAAAGAATGAAAGTTTTTATTTTAAACCAAAGGTTAATCATTATATT
TCTAACGTTGGTAAAACACCAGCAAAAGTTATTTGGATAAGTACTCCACCATCATTTTAA

Upstream 100 bases:

>100_bases
TACTTATAAAATTTATATAATATCATTGTTTGTTTAGTAATTTTAAACTTAAGGTTTAGTAAAAGTGAGTATATTATATA
TTCGACGGTAGGTGTATATT

Downstream 100 bases:

>100_bases
ATTTTAGAGAGAGGTGCTTTTTTAGTGAGCGATAATATAATTAAATTAAATAAAATAAGTAAATCTTACGGTGAACAAAA
AGTATTAGATAATTTATCTT

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNEFFSETKEEQVIFSNDDMFKT
DDEELKYSLMWLVPNAQKNAMEPIMITIEPGGQYIEEEPHDGEEFGYVLSGSIYLHLGKRKLKVKKNESFYFKPKVNHYI
SNVGKTPAKVIWISTPPSF

Sequences:

>Translated_179_residues
MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNEFFSETKEEQVIFSNDDMFKT
DDEELKYSLMWLVPNAQKNAMEPIMITIEPGGQYIEEEPHDGEEFGYVLSGSIYLHLGKRKLKVKKNESFYFKPKVNHYI
SNVGKTPAKVIWISTPPSF
>Mature_179_residues
MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNEFFSETKEEQVIFSNDDMFKT
DDEELKYSLMWLVPNAQKNAMEPIMITIEPGGQYIEEEPHDGEEFGYVLSGSIYLHLGKRKLKVKKNESFYFKPKVNHYI
SNVGKTPAKVIWISTPPSF

Specific function: Represses puuD [H]

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787557, Length=180, Percent_Identity=31.1111111111111, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20614; Mature: 20614

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHH
FFSETKEEQVIFSNDDMFKTDDEELKYSLMWLVPNAQKNAMEPIMITIEPGGQYIEEEPH
HHHHCCCCEEEECCCCCCCCCHHHHEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCC
DGEEFGYVLSGSIYLHLGKRKLKVKKNESFYFKPKVNHYISNVGKTPAKVIWISTPPSF
CCCCCCEEEECEEEEEECCEEEEEECCCCEEECCCHHHHHHHCCCCCEEEEEEECCCCC
>Mature Secondary Structure
MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHH
FFSETKEEQVIFSNDDMFKTDDEELKYSLMWLVPNAQKNAMEPIMITIEPGGQYIEEEPH
HHHHCCCCEEEECCCCCCCCCHHHHEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCC
DGEEFGYVLSGSIYLHLGKRKLKVKKNESFYFKPKVNHYISNVGKTPAKVIWISTPPSF
CCCCCCEEEECEEEEEECCEEEEEECCCCEEECCCHHHHHHHCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1840553 [H]