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The map label for this gene is atpD

Identifier: 187932953

GI number: 187932953

Start: 2935434

End: 2936075

Strand: Reverse

Name: atpD

Synonym: CLL_A2859

Alternate gene names: 187932953

Gene position: 2936075-2935434 (Counterclockwise)

Preceding gene: 187933540

Following gene: 187932571

Centisome position: 77.26

GC content: 31.93

Gene sequence:

>642_bases
ATGGCAAAGCTAAATGTTAATCCTACTAGAATGGAACTCTCTAAGCTTAAAAAAAGATTAACTACCTCAACAAGAAGTCA
TAAGCTTTTAAAAGATAAACAAGATGAATTAATGAGACAATTCATTAACCTTGTTAAATATAATAATAAGCTAAGAAAAG
AAGTGGAAGATAATCTGCAAGGTTCCCTTAAGGATTTCGTTATGGCTAGAGCCGTTATGAGCTCTGAATTCCTAGAAGAA
GCTATTGTATATCCTAAGGAACATATTTCAGTTGAAGTTGGTGAAAAGAACGTAATGAGCGTATCTGTTCCTGTTATGAA
CTTTAAGAGACAACTTGAAGGTGATGAAGGAAGTATATATCCATACGGATTTGCTAATACATCATCAGAACTTGATGATA
CACTTTCTAAACTTTATGAAATTCTTCCGCAATTACTAGAACTTGCAGAAGTAGAAAAGTCATGTCAATTAATGGCTAAC
GAAATTGAAAGTACTAGAAGAAGAGTTAATGCTCTTGAATATATGACAATTCCTCAACTTCAAGAGACTATAAAGTATAT
TAGAATGAGACTTGATGAAAATGAAAGATCTGCTACAACTAGATTAATGAAAGTTAAGAGCATGATTGAACAAAGAGGTT
AA

Upstream 100 bases:

>100_bases
CTTAGGATGGAAGTTATTAAAAATGCTTCCTAGAACTGAGCTTAAGAGAATTAGAGACGAATACCTTGAAAAATATATGC
CAAGAGAGGAAGAGTAGTCT

Downstream 100 bases:

>100_bases
TATAAAAGGAACGCGTAAGCGTTCCTTTTTTCTTTATGTAAAAATCGGTGAATAACTTCTATGATATGTAGTTTAAGAGT
ATAATGATGATCTCTAAAAA

Product: V-type ATP synthase subunit D

Products: ADP; phosphate; H+

Alternate protein names: V-ATPase subunit D

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MAKLNVNPTRMELSKLKKRLTTSTRSHKLLKDKQDELMRQFINLVKYNNKLRKEVEDNLQGSLKDFVMARAVMSSEFLEE
AIVYPKEHISVEVGEKNVMSVSVPVMNFKRQLEGDEGSIYPYGFANTSSELDDTLSKLYEILPQLLELAEVEKSCQLMAN
EIESTRRRVNALEYMTIPQLQETIKYIRMRLDENERSATTRLMKVKSMIEQRG

Sequences:

>Translated_213_residues
MAKLNVNPTRMELSKLKKRLTTSTRSHKLLKDKQDELMRQFINLVKYNNKLRKEVEDNLQGSLKDFVMARAVMSSEFLEE
AIVYPKEHISVEVGEKNVMSVSVPVMNFKRQLEGDEGSIYPYGFANTSSELDDTLSKLYEILPQLLELAEVEKSCQLMAN
EIESTRRRVNALEYMTIPQLQETIKYIRMRLDENERSATTRLMKVKSMIEQRG
>Mature_212_residues
AKLNVNPTRMELSKLKKRLTTSTRSHKLLKDKQDELMRQFINLVKYNNKLRKEVEDNLQGSLKDFVMARAVMSSEFLEEA
IVYPKEHISVEVGEKNVMSVSVPVMNFKRQLEGDEGSIYPYGFANTSSELDDTLSKLYEILPQLLELAEVEKSCQLMANE
IESTRRRVNALEYMTIPQLQETIKYIRMRLDENERSATTRLMKVKSMIEQRG

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG1394

COG function: function code C; Archaeal/vacuolar-type H+-ATPase subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the V-ATPase D subunit family

Homologues:

Organism=Homo sapiens, GI7706757, Length=210, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17553636, Length=213, Percent_Identity=29.1079812206573, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI21355551, Length=211, Percent_Identity=31.2796208530806, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI20128937, Length=211, Percent_Identity=30.3317535545024, Blast_Score=67, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VATD_CLOBA (B2UWY2)

Other databases:

- EMBL:   CP001078
- RefSeq:   YP_001921967.1
- GeneID:   6320016
- GenomeReviews:   CP001078_GR
- KEGG:   cbt:CLH_2587
- HOGENOM:   HBG732046
- OMA:   INVGART
- ProtClustDB:   PRK00373
- HAMAP:   MF_00271
- InterPro:   IPR002699
- PANTHER:   PTHR11671
- TIGRFAMs:   TIGR00309

Pfam domain/function: PF01813 ATP-synt_D

EC number: 3.6.3.14

Molecular weight: Translated: 24773; Mature: 24642

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKLNVNPTRMELSKLKKRLTTSTRSHKLLKDKQDELMRQFINLVKYNNKLRKEVEDNLQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSLKDFVMARAVMSSEFLEEAIVYPKEHISVEVGEKNVMSVSVPVMNFKRQLEGDEGSIY
HHHHHHHHHHHHHHHHHHHHHHHCCHHHCEEEECCCCEEEEECHHHHHHHHHCCCCCCCC
PYGFANTSSELDDTLSKLYEILPQLLELAEVEKSCQLMANEIESTRRRVNALEYMTIPQL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QETIKYIRMRLDENERSATTRLMKVKSMIEQRG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKLNVNPTRMELSKLKKRLTTSTRSHKLLKDKQDELMRQFINLVKYNNKLRKEVEDNLQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSLKDFVMARAVMSSEFLEEAIVYPKEHISVEVGEKNVMSVSVPVMNFKRQLEGDEGSIY
HHHHHHHHHHHHHHHHHHHHHHHCCHHHCEEEECCCCEEEEECHHHHHHHHHCCCCCCCC
PYGFANTSSELDDTLSKLYEILPQLLELAEVEKSCQLMANEIESTRRRVNALEYMTIPQL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QETIKYIRMRLDENERSATTRLMKVKSMIEQRG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA