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The map label for this gene is lyc [H]

Identifier: 187932614

GI number: 187932614

Start: 2437926

End: 2438723

Strand: Reverse

Name: lyc [H]

Synonym: CLL_A2348

Alternate gene names: 187932614

Gene position: 2438723-2437926 (Counterclockwise)

Preceding gene: 187934675

Following gene: 187935607

Centisome position: 64.17

GC content: 28.2

Gene sequence:

>798_bases
ATGAAAGGGATAGATATTAGTAATCATAACGGAATAATAAATTTTACTTCAGTAAAGTCAAGTGGAATTAATTTAGTTTA
TATAAAGGCAACTGAAGGAACAACTTATCAGGATTCAATGTTAAATCAATATTACAATGGTGCAAACTCTGAAGGATTAA
AAACTGGATTTTATCATTTTTTAGTTGGAACAAGTGCTCCAGAATCTCAAGCTCAAAATTTTTATGATAATATAAAAGAA
AAAACAAATGATTTGAAACCATGTTTGGATATAGAAAAAAATGGGTTTGATGTTATGGATTTTGCATTAAGATTTATAAA
GAAATTTGAATCTTTAAGTAATTTACCACTATGTATTTATTCATACCCATATTTTATAAATGATAATTTAGATAGTAGAT
TAGCTAAATATCCACTTTGGGTAGCTAATTATGGAGTTCAAACACCTATTTCTAATGATGTATGGGGAGACTCATATGTA
GGTCATCAATATTCAGAAACAGGAAATGTTAATGGAATAAATGGAAATGTAGATTTAAATACTTTTTATGATGGAATATT
AGTAAATAAAGTTGATAAGGCATATGTAGTAACACAATATTTGCCTAATGGATATAATGGTGATGGAAGTTTTCAAGGAG
TCGATTTAAATTATGTATTAAGCTATATGCCTGGTATTAGATGTTATGCATTAGGAGATTCCAAGGGTGTATGGATAGAA
ACTCAAATGTTAACAATGGAAAAATGCCTGGAACTTAAACAAACCTTAGGGTCTTGGTTTTATGATATAAGGCAATGA

Upstream 100 bases:

>100_bases
AGAAGGAAAGGCACAATTAAACAATATAGAAAAATGTAATTAATATGAATGGATTTTAAACTAATGAGCAAAAAGTAGTA
TAATAAGGAGAAATTAAGTT

Downstream 100 bases:

>100_bases
TAAAAATGAGTAGAGGAATTAACTAAAGAGGATTTTTAGTTGATTCCTTATAAAATTTATATGTTAATAGATTTTATAAT
GTGGTAATAGATATTAATAT

Product: lysozyme M1

Products: NA

Alternate protein names: 1,4-beta-N-acetylmuramidase; Autolysin [H]

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MKGIDISNHNGIINFTSVKSSGINLVYIKATEGTTYQDSMLNQYYNGANSEGLKTGFYHFLVGTSAPESQAQNFYDNIKE
KTNDLKPCLDIEKNGFDVMDFALRFIKKFESLSNLPLCIYSYPYFINDNLDSRLAKYPLWVANYGVQTPISNDVWGDSYV
GHQYSETGNVNGINGNVDLNTFYDGILVNKVDKAYVVTQYLPNGYNGDGSFQGVDLNYVLSYMPGIRCYALGDSKGVWIE
TQMLTMEKCLELKQTLGSWFYDIRQ

Sequences:

>Translated_265_residues
MKGIDISNHNGIINFTSVKSSGINLVYIKATEGTTYQDSMLNQYYNGANSEGLKTGFYHFLVGTSAPESQAQNFYDNIKE
KTNDLKPCLDIEKNGFDVMDFALRFIKKFESLSNLPLCIYSYPYFINDNLDSRLAKYPLWVANYGVQTPISNDVWGDSYV
GHQYSETGNVNGINGNVDLNTFYDGILVNKVDKAYVVTQYLPNGYNGDGSFQGVDLNYVLSYMPGIRCYALGDSKGVWIE
TQMLTMEKCLELKQTLGSWFYDIRQ
>Mature_265_residues
MKGIDISNHNGIINFTSVKSSGINLVYIKATEGTTYQDSMLNQYYNGANSEGLKTGFYHFLVGTSAPESQAQNFYDNIKE
KTNDLKPCLDIEKNGFDVMDFALRFIKKFESLSNLPLCIYSYPYFINDNLDSRLAKYPLWVANYGVQTPISNDVWGDSYV
GHQYSETGNVNGINGNVDLNTFYDGILVNKVDKAYVVTQYLPNGYNGDGSFQGVDLNYVLSYMPGIRCYALGDSKGVWIE
TQMLTMEKCLELKQTLGSWFYDIRQ

Specific function: Unknown

COG id: COG3757

COG function: function code M; Lyzozyme M1 (1,4-beta-N-acetylmuramidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 25 family [H]

Homologues:

Organism=Escherichia coli, GI87082043, Length=191, Percent_Identity=30.8900523560209, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002053
- InterPro:   IPR008270
- InterPro:   IPR017853
- InterPro:   IPR018077
- InterPro:   IPR013781
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF01183 Glyco_hydro_25; PF08239 SH3_3 [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 29935; Mature: 29935

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS00953 GLYCOSYL_HYDROL_F25

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGIDISNHNGIINFTSVKSSGINLVYIKATEGTTYQDSMLNQYYNGANSEGLKTGFYHF
CCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHCEEEE
LVGTSAPESQAQNFYDNIKEKTNDLKPCLDIEKNGFDVMDFALRFIKKFESLSNLPLCIY
EECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
SYPYFINDNLDSRLAKYPLWVANYGVQTPISNDVWGDSYVGHQYSETGNVNGINGNVDLN
ECCEEECCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHH
TFYDGILVNKVDKAYVVTQYLPNGYNGDGSFQGVDLNYVLSYMPGIRCYALGDSKGVWIE
HHHCCEEEECCCCEEEEEECCCCCCCCCCCEECCHHHHHHHHCCCEEEEEECCCCCEEEE
TQMLTMEKCLELKQTLGSWFYDIRQ
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKGIDISNHNGIINFTSVKSSGINLVYIKATEGTTYQDSMLNQYYNGANSEGLKTGFYHF
CCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHCEEEE
LVGTSAPESQAQNFYDNIKEKTNDLKPCLDIEKNGFDVMDFALRFIKKFESLSNLPLCIY
EECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
SYPYFINDNLDSRLAKYPLWVANYGVQTPISNDVWGDSYVGHQYSETGNVNGINGNVDLN
ECCEEECCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHH
TFYDGILVNKVDKAYVVTQYLPNGYNGDGSFQGVDLNYVLSYMPGIRCYALGDSKGVWIE
HHHCCEEEECCCCEEEEEECCCCCCCCCCCEECCHHHHHHHHCCCEEEEEECCCCCEEEE
TQMLTMEKCLELKQTLGSWFYDIRQ
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792842; 8177218 [H]