Definition Clostridium botulinum B str. Eklund 17B, complete genome.
Accession NC_010674
Length 3,800,327

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The map label for this gene is ydjE [H]

Identifier: 187932584

GI number: 187932584

Start: 3651155

End: 3652093

Strand: Reverse

Name: ydjE [H]

Synonym: CLL_A3455

Alternate gene names: 187932584

Gene position: 3652093-3651155 (Counterclockwise)

Preceding gene: 187933523

Following gene: 187932719

Centisome position: 96.1

GC content: 28.54

Gene sequence:

>939_bases
ATGAATAGTAATGTTTTTTGTATTGGTGAACTTTTAATCGACATGGTATGTGTTGATAATAAAGGATTAAAATATGGAGA
AAAATTTGAAAAAAAAGCAGGTGGAGCTCCAGCTAATGTAGCGGCAAGTATAAGTAAGCTAGAAGGAAATACATACTTTT
TAGGCCAAGTTGGAAGTGACTTCTTTGGTAAATACTTAGTTGAATTATTAAAAGATTTAAATATAAATACAGATATGACT
GTTGAAAAGGGAAGCACTACAATTGCTTTAGTTGGAATAGATGAAAATGGAGAACGTAATTTTGACTTTTTAAGAGGCAG
TGATGGAGAATATTCATTTGATAATATTGATACATCAAAGATAAGTGAATGTGACATAATACATTTTGGATCAGCTACAG
GATTTTTAGATGGAGAATTAAAAAATACTTACTATAAACTATTGGACTATGCAAAATCTAAGAACATATATACATCATTT
GATCCTAATTATAGAGATGCATTAATAACTGATGAAAAGTTAGATTTATTTGTAAAAGACTGTATAGAATTTTTAAAAAA
GAGTGATTTTACAAAATTAAGTGATGAAGAATTAACTTTAATAACAAAGGAAGAAGACTTGGAAGCTGGAGTTAAAAAGT
TACATGAATTAGGTGTTAAAGTAGTAACTATTACTTTAGGTTCAAAAGGAACTTACTTAAGCGTATTAGGACAAAATGAA
ATAATACCATCAATAAAAATTAAACAAGTAGACTCAACAGGTGCAGGAGATTCATTTGTGGGTGCTGTATTAAAACAAGT
AGCTGAAATTGAAGATAAGAAAAATATAGGATTTAAAGAATGGAAAAACATTATTACATTTGCTAACAAAGTAGGTGCAA
TAACATGCACTAATTATGGTGCAATAGCGTCAATGCCTACACTAAGTGATTTAAAATAA

Upstream 100 bases:

>100_bases
ATGTATTTCCCTAAAGAAGAGTGTTTAGATATTGAAATTAAAGATAATAGTAAAGTAAAAATTAATGAATTAAATGTATG
GAATTTAAGGAGTGTAAGAT

Downstream 100 bases:

>100_bases
CGGCTTTGTTTTAAAAACCTATTGATTTAAAATATTAGTAAAATAAATTAAGGTATTTATAATTAGTATAAAGCTCATGG
TCTTAATTTTAAACTTGAGA

Product: fructokinase

Products: ADP; D-fructose 6-phosphate

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MNSNVFCIGELLIDMVCVDNKGLKYGEKFEKKAGGAPANVAASISKLEGNTYFLGQVGSDFFGKYLVELLKDLNINTDMT
VEKGSTTIALVGIDENGERNFDFLRGSDGEYSFDNIDTSKISECDIIHFGSATGFLDGELKNTYYKLLDYAKSKNIYTSF
DPNYRDALITDEKLDLFVKDCIEFLKKSDFTKLSDEELTLITKEEDLEAGVKKLHELGVKVVTITLGSKGTYLSVLGQNE
IIPSIKIKQVDSTGAGDSFVGAVLKQVAEIEDKKNIGFKEWKNIITFANKVGAITCTNYGAIASMPTLSDLK

Sequences:

>Translated_312_residues
MNSNVFCIGELLIDMVCVDNKGLKYGEKFEKKAGGAPANVAASISKLEGNTYFLGQVGSDFFGKYLVELLKDLNINTDMT
VEKGSTTIALVGIDENGERNFDFLRGSDGEYSFDNIDTSKISECDIIHFGSATGFLDGELKNTYYKLLDYAKSKNIYTSF
DPNYRDALITDEKLDLFVKDCIEFLKKSDFTKLSDEELTLITKEEDLEAGVKKLHELGVKVVTITLGSKGTYLSVLGQNE
IIPSIKIKQVDSTGAGDSFVGAVLKQVAEIEDKKNIGFKEWKNIITFANKVGAITCTNYGAIASMPTLSDLK
>Mature_312_residues
MNSNVFCIGELLIDMVCVDNKGLKYGEKFEKKAGGAPANVAASISKLEGNTYFLGQVGSDFFGKYLVELLKDLNINTDMT
VEKGSTTIALVGIDENGERNFDFLRGSDGEYSFDNIDTSKISECDIIHFGSATGFLDGELKNTYYKLLDYAKSKNIYTSF
DPNYRDALITDEKLDLFVKDCIEFLKKSDFTKLSDEELTLITKEEDLEAGVKKLHELGVKVVTITLGSKGTYLSVLGQNE
IIPSIKIKQVDSTGAGDSFVGAVLKQVAEIEDKKNIGFKEWKNIITFANKVGAITCTNYGAIASMPTLSDLK

Specific function: Unknown

COG id: COG0524

COG function: function code G; Sugar kinases, ribokinase family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carbohydrate kinase pfkB family [H]

Homologues:

Organism=Escherichia coli, GI87081971, Length=315, Percent_Identity=24.7619047619048, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790193, Length=252, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87082343, Length=316, Percent_Identity=25.6329113924051, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87082281, Length=277, Percent_Identity=21.2996389891697, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17532905, Length=323, Percent_Identity=24.4582043343653, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011611
- InterPro:   IPR002173 [H]

Pfam domain/function: PF00294 PfkB [H]

EC number: 2.7.1.4

Molecular weight: Translated: 34294; Mature: 34294

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS00584 PFKB_KINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSNVFCIGELLIDMVCVDNKGLKYGEKFEKKAGGAPANVAASISKLEGNTYFLGQVGSD
CCCCEEEHHHHHHHHHEECCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCEEEEECCCHH
FFGKYLVELLKDLNINTDMTVEKGSTTIALVGIDENGERNFDFLRGSDGEYSFDNIDTSK
HHHHHHHHHHHHCCCCCCEEEECCCEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCC
ISECDIIHFGSATGFLDGELKNTYYKLLDYAKSKNIYTSFDPNYRDALITDEKLDLFVKD
CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCEECCHHHHHHHHH
CIEFLKKSDFTKLSDEELTLITKEEDLEAGVKKLHELGVKVVTITLGSKGTYLSVLGQNE
HHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEECCCC
IIPSIKIKQVDSTGAGDSFVGAVLKQVAEIEDKKNIGFKEWKNIITFANKVGAITCTNYG
CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC
AIASMPTLSDLK
CHHCCCCHHCCC
>Mature Secondary Structure
MNSNVFCIGELLIDMVCVDNKGLKYGEKFEKKAGGAPANVAASISKLEGNTYFLGQVGSD
CCCCEEEHHHHHHHHHEECCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCEEEEECCCHH
FFGKYLVELLKDLNINTDMTVEKGSTTIALVGIDENGERNFDFLRGSDGEYSFDNIDTSK
HHHHHHHHHHHHCCCCCCEEEECCCEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCC
ISECDIIHFGSATGFLDGELKNTYYKLLDYAKSKNIYTSFDPNYRDALITDEKLDLFVKD
CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCEECCHHHHHHHHH
CIEFLKKSDFTKLSDEELTLITKEEDLEAGVKKLHELGVKVVTITLGSKGTYLSVLGQNE
HHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEECCCC
IIPSIKIKQVDSTGAGDSFVGAVLKQVAEIEDKKNIGFKEWKNIITFANKVGAITCTNYG
CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC
AIASMPTLSDLK
CHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; D-fructose

Specific reaction: ATP + D-fructose = ADP + D-fructose 6-phosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9455482; 9384377 [H]