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The map label for this gene is yggS [C]

Identifier: 187932582

GI number: 187932582

Start: 2520530

End: 2521204

Strand: Reverse

Name: yggS [C]

Synonym: CLL_A2437

Alternate gene names: 187932582

Gene position: 2521204-2520530 (Counterclockwise)

Preceding gene: 187933564

Following gene: 187933076

Centisome position: 66.34

GC content: 27.85

Gene sequence:

>675_bases
ATGAGCATTAAGGAAAATATAGAAAAGCTAAAATTAGAAATTCCTAAAAATGTAGAGCTCCTGGCTGTTTCTAAAACCAA
ACCTATAGAGGATTTAAAAGAAGCATATGAAGCAGGAATTAGAGATTTTGGTGAAAATAAAGTACAAGAACTTGTTAGTA
AGGAAGTAAGTCTTCCAAAGGATATAAGATGGCATCTAATAGGTAAACTTCAAACTAATAAAGTTAAATATTTAGTGGAT
AAAGTTTACTTAATACATTCTTTGTCTAGTATAAAACTTTTGAATGAAATTGAAAGAGTTTTTGAAAAAAATAATATGGT
AGCAAATGTATTAATTCAAATAAATATTGGTAGAGAAGAAAGTAAAAGTGGAATATTAAAAGAAGAATTACCTGACATAA
TAGAAGCTATTGAAACATGTGATCATGTATTAGCTAAGGGCATTATGGTTATTATTCCTAAAGGTGATGAAAAAAATAAT
AAAAAATACTTTAAGGAAACGAAGGAAATATTCGATTATTTAAAAGTAAGGGAATATAGAAATATAAAGATGGAAGTACT
TTCTATGGGAATGACTCATGATTTTAATGAGGCAATAGAGGAAGGTTCTACTTTAGTGAGAATTGGACAGGGAATATTTG
GAGAAAGAAACTATAGTACAGGAGGAGAAAAATAA

Upstream 100 bases:

>100_bases
AAAAATTAAAAAAAATTTAATTTTAATGCACTTTATTAAAGGAAATTTAATTTTTATAGAGAATAATATTATAGAGAATA
ATAAGTAAAAGGAGTAGACT

Downstream 100 bases:

>100_bases
TGAGTAATGTATTAACAAAAATGAAGTCATTTTTAGGATTAGGGGACGATGAATACGATGAATATGATGACTTTGATGAA
AATTATGAAGATTCAGAAGA

Product: pyridoxal phosphate enzyme, YggS family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSIKENIEKLKLEIPKNVELLAVSKTKPIEDLKEAYEAGIRDFGENKVQELVSKEVSLPKDIRWHLIGKLQTNKVKYLVD
KVYLIHSLSSIKLLNEIERVFEKNNMVANVLIQINIGREESKSGILKEELPDIIEAIETCDHVLAKGIMVIIPKGDEKNN
KKYFKETKEIFDYLKVREYRNIKMEVLSMGMTHDFNEAIEEGSTLVRIGQGIFGERNYSTGGEK

Sequences:

>Translated_224_residues
MSIKENIEKLKLEIPKNVELLAVSKTKPIEDLKEAYEAGIRDFGENKVQELVSKEVSLPKDIRWHLIGKLQTNKVKYLVD
KVYLIHSLSSIKLLNEIERVFEKNNMVANVLIQINIGREESKSGILKEELPDIIEAIETCDHVLAKGIMVIIPKGDEKNN
KKYFKETKEIFDYLKVREYRNIKMEVLSMGMTHDFNEAIEEGSTLVRIGQGIFGERNYSTGGEK
>Mature_223_residues
SIKENIEKLKLEIPKNVELLAVSKTKPIEDLKEAYEAGIRDFGENKVQELVSKEVSLPKDIRWHLIGKLQTNKVKYLVDK
VYLIHSLSSIKLLNEIERVFEKNNMVANVLIQINIGREESKSGILKEELPDIIEAIETCDHVLAKGIMVIIPKGDEKNNK
KYFKETKEIFDYLKVREYRNIKMEVLSMGMTHDFNEAIEEGSTLVRIGQGIFGERNYSTGGEK

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=234, Percent_Identity=35.4700854700855, Blast_Score=120, Evalue=9e-28,
Organism=Escherichia coli, GI1789321, Length=211, Percent_Identity=38.3886255924171, Blast_Score=130, Evalue=8e-32,
Organism=Caenorhabditis elegans, GI17533025, Length=232, Percent_Identity=32.7586206896552, Blast_Score=100, Evalue=5e-22,
Organism=Saccharomyces cerevisiae, GI6319435, Length=211, Percent_Identity=39.8104265402844, Blast_Score=123, Evalue=2e-29,
Organism=Drosophila melanogaster, GI45550861, Length=229, Percent_Identity=37.5545851528384, Blast_Score=129, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25723; Mature: 25592

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKENIEKLKLEIPKNVELLAVSKTKPIEDLKEAYEAGIRDFGENKVQELVSKEVSLPK
CCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
DIRWHLIGKLQTNKVKYLVDKVYLIHSLSSIKLLNEIERVFEKNNMVANVLIQINIGREE
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCC
SKSGILKEELPDIIEAIETCDHVLAKGIMVIIPKGDEKNNKKYFKETKEIFDYLKVREYR
HHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
NIKMEVLSMGMTHDFNEAIEEGSTLVRIGQGIFGERNYSTGGEK
HHHHHHHHHCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIKENIEKLKLEIPKNVELLAVSKTKPIEDLKEAYEAGIRDFGENKVQELVSKEVSLPK
CHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
DIRWHLIGKLQTNKVKYLVDKVYLIHSLSSIKLLNEIERVFEKNNMVANVLIQINIGREE
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCC
SKSGILKEELPDIIEAIETCDHVLAKGIMVIIPKGDEKNNKKYFKETKEIFDYLKVREYR
HHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
NIKMEVLSMGMTHDFNEAIEEGSTLVRIGQGIFGERNYSTGGEK
HHHHHHHHHCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]