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The map label for this gene is intR [C]

Identifier: 187932470

GI number: 187932470

Start: 33191

End: 34345

Strand: Reverse

Name: intR [C]

Synonym: CLL_A0031

Alternate gene names: 187932470

Gene position: 34345-33191 (Counterclockwise)

Preceding gene: 187933844

Following gene: 187935540

Centisome position: 0.9

GC content: 27.71

Gene sequence:

>1155_bases
ATGGCAAGTTATGAGCAACTAACTAAATACAACTGGAAGGCTACTGTAAGCCTTGGATATGAAAATGGAAAACAAGTTAA
GACACGTAAACAAGGATTTAAAACTAAAAAAGATGCTGAAATATGGGTAACTGATACACTAGGTAAAAAACATAAAGGTT
ATATTGCTCTAACAAATAGCAACATACTTTTTAAAGATTATATTAATAAATGGTTTAATGAATATAAAGTTTTAAATGTA
AGTATCAACACTAAGAATGATTATATATACAGAATAAACGCTCATGTAGTTCCTATGATTGGGAATTACAAACTTAGTGA
ATTAAGTACCTCAATCATTCAAGATTTCTACAACAAGCTAATAAGTGAAAAAGGAATGAAACCAGTATCAGCAAAAAAGG
TTTATGACATAGTTAATGGCTGCCTAAAATATGCTAAAAAATCAAAATTAATTTATGATCTACCTACAGATATTGAAAAG
CAAAAGCTAGTTAAACCAGAAATTGAATTTTGGACTAAAAAAGAAATTGATTTTTTCTTAGATAAAATTAATGATTTATA
CCTTTATTCTCCAGTTTTTCTTGATGTTCTTACAGGATTAAGAGTTGGTGAATTATGTGGTTTAAGATGGTGTGATGTTA
ATTTAGAAAGTGGATATATAGAAGTTAATAGTCAAGTTATTCAAGATAGGATTAATAAAGAATTGATATTCTCGTCAATT
TTAAAGACTTCTACAAGCCATAGAAATATTTCTATACCTCCAGTATTAATTGACTTTTTAAAGGCTATGAAAGAAGATAA
CAACGCTTTAGAAAATGACTTTGTTATACTAAGTCGTGAAGGGCTTATGTGTAATCCTCGTAATTTATCAATGAATTTTA
CTAAAACAGTTGCTAAATATAAAAAGTCTATTGATGATATTGAAAAAGAAAATAAAGAAGTTCCAAAAGATTATATGCAG
CTAAAGCAAATATCATTTCATGGATTAAGACACACCCACGCCACGTTATTAATATTTAATGGTGAAAATATAAAGGTGGT
ATCTGATAGGCTTGGTCATAGGGATATAAGCATTACATTAAACACTTATACTCATATTATGGATGATATGAAAAGTAATA
CTGCAACTCTATTAAATAACCTATTTAAAAAATAG

Upstream 100 bases:

>100_bases
TTCAGGAAAAACAATACATAAAATATACACTATCTTAGAAAAAATACGTTTACTTAAATTTAGTAGCAGAAAATACAGAA
ATAATATGGAGGGCGAATAG

Downstream 100 bases:

>100_bases
AATTACACGCCTATGTAATCCCTTAAAAACCTTCTTAAAGAGAATAATCCCCAAACAATCCCTATTTTAAGCATAATAAA
AGGCTTAACCATAGTGATTA

Product: DNA integration/recombination/invertion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MASYEQLTKYNWKATVSLGYENGKQVKTRKQGFKTKKDAEIWVTDTLGKKHKGYIALTNSNILFKDYINKWFNEYKVLNV
SINTKNDYIYRINAHVVPMIGNYKLSELSTSIIQDFYNKLISEKGMKPVSAKKVYDIVNGCLKYAKKSKLIYDLPTDIEK
QKLVKPEIEFWTKKEIDFFLDKINDLYLYSPVFLDVLTGLRVGELCGLRWCDVNLESGYIEVNSQVIQDRINKELIFSSI
LKTSTSHRNISIPPVLIDFLKAMKEDNNALENDFVILSREGLMCNPRNLSMNFTKTVAKYKKSIDDIEKENKEVPKDYMQ
LKQISFHGLRHTHATLLIFNGENIKVVSDRLGHRDISITLNTYTHIMDDMKSNTATLLNNLFKK

Sequences:

>Translated_384_residues
MASYEQLTKYNWKATVSLGYENGKQVKTRKQGFKTKKDAEIWVTDTLGKKHKGYIALTNSNILFKDYINKWFNEYKVLNV
SINTKNDYIYRINAHVVPMIGNYKLSELSTSIIQDFYNKLISEKGMKPVSAKKVYDIVNGCLKYAKKSKLIYDLPTDIEK
QKLVKPEIEFWTKKEIDFFLDKINDLYLYSPVFLDVLTGLRVGELCGLRWCDVNLESGYIEVNSQVIQDRINKELIFSSI
LKTSTSHRNISIPPVLIDFLKAMKEDNNALENDFVILSREGLMCNPRNLSMNFTKTVAKYKKSIDDIEKENKEVPKDYMQ
LKQISFHGLRHTHATLLIFNGENIKVVSDRLGHRDISITLNTYTHIMDDMKSNTATLLNNLFKK
>Mature_383_residues
ASYEQLTKYNWKATVSLGYENGKQVKTRKQGFKTKKDAEIWVTDTLGKKHKGYIALTNSNILFKDYINKWFNEYKVLNVS
INTKNDYIYRINAHVVPMIGNYKLSELSTSIIQDFYNKLISEKGMKPVSAKKVYDIVNGCLKYAKKSKLIYDLPTDIEKQ
KLVKPEIEFWTKKEIDFFLDKINDLYLYSPVFLDVLTGLRVGELCGLRWCDVNLESGYIEVNSQVIQDRINKELIFSSIL
KTSTSHRNISIPPVLIDFLKAMKEDNNALENDFVILSREGLMCNPRNLSMNFTKTVAKYKKSIDDIEKENKEVPKDYMQL
KQISFHGLRHTHATLLIFNGENIKVVSDRLGHRDISITLNTYTHIMDDMKSNTATLLNNLFKK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44537; Mature: 44406

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASYEQLTKYNWKATVSLGYENGKQVKTRKQGFKTKKDAEIWVTDTLGKKHKGYIALTNS
CCCHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEECC
NILFKDYINKWFNEYKVLNVSINTKNDYIYRINAHVVPMIGNYKLSELSTSIIQDFYNKL
CEEHHHHHHHHHCCEEEEEEEEECCCCEEEEEECEEEEEECCEEHHHHHHHHHHHHHHHH
ISEKGMKPVSAKKVYDIVNGCLKYAKKSKLIYDLPTDIEKQKLVKPEIEFWTKKEIDFFL
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHCCCCCHHHHHHHHHHHHH
DKINDLYLYSPVFLDVLTGLRVGELCGLRWCDVNLESGYIEVNSQVIQDRINKELIFSSI
HHHCCEEEEHHHHHHHHHCCCHHHHCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHH
LKTSTSHRNISIPPVLIDFLKAMKEDNNALENDFVILSREGLMCNPRNLSMNFTKTVAKY
HHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECCCCCCCHHHHHHHHH
KKSIDDIEKENKEVPKDYMQLKQISFHGLRHTHATLLIFNGENIKVVSDRLGHRDISITL
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCEECEEEEEEECCCCEEEEECCCCCCEEEEEE
NTYTHIMDDMKSNTATLLNNLFKK
HHHHHHHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure 
ASYEQLTKYNWKATVSLGYENGKQVKTRKQGFKTKKDAEIWVTDTLGKKHKGYIALTNS
CCHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEECC
NILFKDYINKWFNEYKVLNVSINTKNDYIYRINAHVVPMIGNYKLSELSTSIIQDFYNKL
CEEHHHHHHHHHCCEEEEEEEEECCCCEEEEEECEEEEEECCEEHHHHHHHHHHHHHHHH
ISEKGMKPVSAKKVYDIVNGCLKYAKKSKLIYDLPTDIEKQKLVKPEIEFWTKKEIDFFL
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHCCCCCHHHHHHHHHHHHH
DKINDLYLYSPVFLDVLTGLRVGELCGLRWCDVNLESGYIEVNSQVIQDRINKELIFSSI
HHHCCEEEEHHHHHHHHHCCCHHHHCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHH
LKTSTSHRNISIPPVLIDFLKAMKEDNNALENDFVILSREGLMCNPRNLSMNFTKTVAKY
HHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECCCCCCCHHHHHHHHH
KKSIDDIEKENKEVPKDYMQLKQISFHGLRHTHATLLIFNGENIKVVSDRLGHRDISITL
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCEECEEEEEEECCCCEEEEECCCCCCEEEEEE
NTYTHIMDDMKSNTATLLNNLFKK
HHHHHHHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]