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The map label for this gene is yjbM [H]

Identifier: 187932451

GI number: 187932451

Start: 3274441

End: 3275232

Strand: Reverse

Name: yjbM [H]

Synonym: CLL_A3159

Alternate gene names: 187932451

Gene position: 3275232-3274441 (Counterclockwise)

Preceding gene: 187934789

Following gene: 187933995

Centisome position: 86.18

GC content: 28.54

Gene sequence:

>792_bases
ATGGCAATAAACGATTGGAAAAGTTTTTTAATGCCGTATGAGCAAGCAGTAGAGGAACTTAAGGTAAAATTAAAGTCTAT
AAGAAAAGAATATAGAAGAAAAAATGAATATTCACCGATAGAGTTTGTTACTGGCAGAGTAAAAGAAGTTTCTAGTATAT
TAGAAAAAGCTAATAAATTTGAAATACCTATAGATCAAGTTAGATATGAATTAGAAGACATAGCTGGAATAAGAATAATG
TGTCAATTTGTAGACGATATAACTAAAGTTGTAGAATTATTGCGTGGCAGAAAGGACATGCAAATTCTTTATGAAAAAGA
CTATGTTAGAAATGTAAAAGAAAGTGGTTATAGAAGCTACCACATGATAATAAAATATCAAGTAAATATGGCAGAAGGAC
CAGTAGATATTCTTGCAGAGTTCCAAATTAGAACTTTGGCTATGAATTTTTGGGCTACTATTGAACATTCGCTTAATTAT
AAATATAAACAAAACATACCTACTCAGTTGAAAGAAAAACTTAAAAGTTCAGCTGACGCAGCTTTTAAATTAGATGAAGA
AATGCTACAAATAAAAGATGAAATAAAAGATGCCCAAAAGCTTTTTGAAGTGAAATCTAGCATAATTTCAAATATTATGA
ACTCTTTATTGACTTTAAGCTCATTAGGTAAAGAAGCAGAAGCAGCAAGACATGAAAAGACTTTAAATAAACTTATTCAA
TACGGAGAAATTTGGGAATTGGATAACTTATTATTTTATGTTAAAAAAGATGTTGAAAAATATAGAGAATAA

Upstream 100 bases:

>100_bases
TATACTATTAAAAAAAATAATTCTAATTATATAAATAATTACACAGAATCTAAAGTTTTTGATATAATAAATATGAACGA
TATTTAAAAGGATGGTATTT

Downstream 100 bases:

>100_bases
TATTAAAGCTATGTTTGATAGTATGTCAAACATAGCTTTAATATTAGATAAAATTTTAAAAGAAAGGATTATATAACTAT
GATAAGTAAAGAATTGATGA

Product: RelA/spoT family protein

Products: NA

Alternate protein names: (p)ppGpp synthase yjbM; Small alarmone synthase 1; SAS 1 [H]

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MAINDWKSFLMPYEQAVEELKVKLKSIRKEYRRKNEYSPIEFVTGRVKEVSSILEKANKFEIPIDQVRYELEDIAGIRIM
CQFVDDITKVVELLRGRKDMQILYEKDYVRNVKESGYRSYHMIIKYQVNMAEGPVDILAEFQIRTLAMNFWATIEHSLNY
KYKQNIPTQLKEKLKSSADAAFKLDEEMLQIKDEIKDAQKLFEVKSSIISNIMNSLLTLSSLGKEAEAARHEKTLNKLIQ
YGEIWELDNLLFYVKKDVEKYRE

Sequences:

>Translated_263_residues
MAINDWKSFLMPYEQAVEELKVKLKSIRKEYRRKNEYSPIEFVTGRVKEVSSILEKANKFEIPIDQVRYELEDIAGIRIM
CQFVDDITKVVELLRGRKDMQILYEKDYVRNVKESGYRSYHMIIKYQVNMAEGPVDILAEFQIRTLAMNFWATIEHSLNY
KYKQNIPTQLKEKLKSSADAAFKLDEEMLQIKDEIKDAQKLFEVKSSIISNIMNSLLTLSSLGKEAEAARHEKTLNKLIQ
YGEIWELDNLLFYVKKDVEKYRE
>Mature_262_residues
AINDWKSFLMPYEQAVEELKVKLKSIRKEYRRKNEYSPIEFVTGRVKEVSSILEKANKFEIPIDQVRYELEDIAGIRIMC
QFVDDITKVVELLRGRKDMQILYEKDYVRNVKESGYRSYHMIIKYQVNMAEGPVDILAEFQIRTLAMNFWATIEHSLNYK
YKQNIPTQLKEKLKSSADAAFKLDEEMLQIKDEIKDAQKLFEVKSSIISNIMNSLLTLSSLGKEAEAARHEKTLNKLIQY
GEIWELDNLLFYVKKDVEKYRE

Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a

COG id: COG2357

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the relA/spoT family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007685 [H]

Pfam domain/function: PF04607 RelA_SpoT [H]

EC number: =2.7.6.5 [H]

Molecular weight: Translated: 31074; Mature: 30943

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAINDWKSFLMPYEQAVEELKVKLKSIRKEYRRKNEYSPIEFVTGRVKEVSSILEKANKF
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
EIPIDQVRYELEDIAGIRIMCQFVDDITKVVELLRGRKDMQILYEKDYVRNVKESGYRSY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEE
HMIIKYQVNMAEGPVDILAEFQIRTLAMNFWATIEHSLNYKYKQNIPTQLKEKLKSSADA
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCCH
AFKLDEEMLQIKDEIKDAQKLFEVKSSIISNIMNSLLTLSSLGKEAEAARHEKTLNKLIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
YGEIWELDNLLFYVKKDVEKYRE
HCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AINDWKSFLMPYEQAVEELKVKLKSIRKEYRRKNEYSPIEFVTGRVKEVSSILEKANKF
CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
EIPIDQVRYELEDIAGIRIMCQFVDDITKVVELLRGRKDMQILYEKDYVRNVKESGYRSY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEE
HMIIKYQVNMAEGPVDILAEFQIRTLAMNFWATIEHSLNYKYKQNIPTQLKEKLKSSADA
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCCH
AFKLDEEMLQIKDEIKDAQKLFEVKSSIISNIMNSLLTLSSLGKEAEAARHEKTLNKLIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
YGEIWELDNLLFYVKKDVEKYRE
HCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]